4931419H13Rik Gene Detail

Summary

• Symbol
  4931419H13Rik
• Name
  RIKEN cDNA 4931419H13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918220
  NCBI Gene: 70970
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:54962663-54991423 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1091 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918220	lncRNA gene	Chr3:54962663-54991423 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003750	antisense lncRNA gene	Chr3:53781734-53811492 (+)
A/J	MGP_AJ_G0003730	antisense lncRNA gene	Chr3:52116102-52145172 (+)
AKR/J	MGP_AKRJ_G0003707	antisense lncRNA gene	Chr3:53186552-53223226 (+)
BALB/cJ	MGP_BALBcJ_G0003719	antisense lncRNA gene	Chr3:51967008-51996877 (+)
C3H/HeJ	MGP_C3HHeJ_G0003666	antisense lncRNA gene	Chr3:53397190-53428502 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003860	antisense lncRNA gene	Chr3:55814929-55860093 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003364	antisense lncRNA gene	Chr3:48632502-48664246 (+)
CAST/EiJ	MGP_CASTEiJ_G0003629	antisense lncRNA gene	Chr3:53539201-53568397 (+)
CBA/J	MGP_CBAJ_G0003662	antisense lncRNA gene	Chr3:57605583-57640956 (+)
DBA/2J	MGP_DBA2J_G0003671	antisense lncRNA gene	Chr3:51668909-51698173 (+)
FVB/NJ	MGP_FVBNJ_G0003692	antisense lncRNA gene	Chr3:50654560-50687546 (+)
LP/J	MGP_LPJ_G0003751	antisense lncRNA gene	Chr3:54485849-54515618 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003680	antisense lncRNA gene	Chr3:61716964-61755461 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003861	antisense lncRNA gene	Chr3:53104384-53133166 (+)
PWK/PhJ	MGP_PWKPhJ_G0003586	antisense lncRNA gene	Chr3:51340755-51370251 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003528	antisense lncRNA gene	Chr3:52856500-52887669 (+)
WSB/EiJ	MGP_WSBEiJ_G0003665	antisense lncRNA gene	Chr3:53228900-53258516 (+)

Homology

• Gene Tree
  4931419H13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 4931419H13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000106589 (Evidence)
• NCBI Gene
  70970

Representative Sequences			Length	Strain/Species
genomic	70970	NCBI Gene Model | MGI Sequence Detail	28761	C57BL/6J
transcript	NR_040593	RefSeq | MGI Sequence Detail	973	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4931419H13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29145	Chr3:54962638-54962657 (+)	-15 bp
Tssr29146	Chr3:54962658-54962690 (+)	11 bp