4933401B06Rik Pseudogene Detail

Summary

• Symbol
  4933401B06Rik
• Name
  RIKEN cDNA 4933401B06 gene

• Feature Type
  pseudogene
• IDs
  MGI:1918261
  NCBI Gene: 71011
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:106586197-106587351 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.56 cM, cytoband D
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918261	pseudogene	ChrX:106586188-106587406 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039773	pseudogene	ChrX:104385215-104386433 (+)
A/J	MGP_AJ_G0039769	pseudogene	ChrX:104208859-104210077 (+)
AKR/J	MGP_AKRJ_G0039695	pseudogene	ChrX:107479247-107480465 (+)
BALB/cJ	MGP_BALBcJ_G0039741	pseudogene	ChrX:102959795-102961013 (+)
C3H/HeJ	MGP_C3HHeJ_G0039399	pseudogene	ChrX:104858855-104860073 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040301	pseudogene	ChrX:107416438-107417656 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036925	pseudogene	ChrX:101470677-101471890 (+)
CAST/EiJ	MGP_CASTEiJ_G0038517	pseudogene	ChrX:88935283-88936501 (+)
CBA/J	MGP_CBAJ_G0039372	pseudogene	ChrX:110771627-110772845 (+)
DBA/2J	MGP_DBA2J_G0039567	pseudogene	ChrX:103431394-103432612 (+)
FVB/NJ	MGP_FVBNJ_G0039525	pseudogene	ChrX:102802733-102803951 (+)
LP/J	MGP_LPJ_G0039608	pseudogene	ChrX:105334523-105335741 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039528	pseudogene	ChrX:115575427-115576645 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040408	pseudogene	ChrX:103935324-103936542 (+)
PWK/PhJ	MGP_PWKPhJ_G0038195	pseudogene	ChrX:86462129-86463347 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037939	pseudogene	ChrX:89728654-89729872 (+)
WSB/EiJ	MGP_WSBEiJ_G0038750	pseudogene	ChrX:102722671-102723889 (+)

Homology

• Gene Tree
  4933401B06Rik
  

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000055700 (Evidence)
• NCBI Gene
  71011

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055700	Ensembl Gene Model | MGI Sequence Detail	1155	C57BL/6J
transcript	ENSMUST00000139758	Ensembl | MGI Sequence Detail	1155	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4933401B06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161829	ChrX:106586171-106586183 (+)	-20 bp
Tssr161830	ChrX:106586193-106586201 (+)	0 bp