4933401H06Rik Gene Detail

Summary

• Symbol
  4933401H06Rik
• Name
  RIKEN cDNA 4933401H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918288
  NCBI Gene: 71038
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:135539462-135546030 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  385 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918288	lncRNA gene	Chr3:135539455-135546030 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015526	unclassified non-coding RNA gene	Chr3:138754815-138765135 (-)
A/J	MGP_AJ_G0015503	unclassified non-coding RNA gene	Chr3:133875847-133882881 (-)
AKR/J	MGP_AKRJ_G0015467	unclassified non-coding RNA gene	Chr3:137413935-137424303 (-)
BALB/cJ	MGP_BALBcJ_G0015465	unclassified non-coding RNA gene	Chr3:133709653-133715993 (-)
C3H/HeJ	MGP_C3HHeJ_G0015288	unclassified non-coding RNA gene	Chr3:137757635-137764656 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015919	unclassified non-coding RNA gene	Chr3:143597992-143606239 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013654	unclassified non-coding RNA gene	Chr3:129086985-129098633 (-)
CAST/EiJ	MGP_CASTEiJ_G0014842	unclassified non-coding RNA gene	Chr3:137487367-137498742 (-)
CBA/J	MGP_CBAJ_G0015269	unclassified non-coding RNA gene	Chr3:148434943-148447771 (-)
DBA/2J	MGP_DBA2J_G0015363	unclassified non-coding RNA gene	Chr3:133021329-133031638 (-)
FVB/NJ	MGP_FVBNJ_G0015370	unclassified non-coding RNA gene	Chr3:130510175-130520429 (-)
LP/J	MGP_LPJ_G0015442	unclassified non-coding RNA gene	Chr3:140175525-140187039 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015394	unclassified non-coding RNA gene	Chr3:156540558-156551867 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015960	unclassified non-coding RNA gene	Chr3:136953591-136964870 (-)
PWK/PhJ	MGP_PWKPhJ_G0014628	unclassified non-coding RNA gene	Chr3:132744362-132754489 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014416	unclassified non-coding RNA gene	Chr3:135039343-135049343 (-)
WSB/EiJ	MGP_WSBEiJ_G0014948	unclassified non-coding RNA gene	Chr3:137746154-137756383 (-)

Homology

• Gene Tree
  4933401H06Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933401H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000106306 (Evidence)
• NCBI Gene
  71038

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106306	Ensembl Gene Model | MGI Sequence Detail	6569	C57BL/6J
transcript	ENSMUST00000200529	Ensembl | MGI Sequence Detail	1202	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4933401H06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35840	Chr3:135546015-135546049 (-)	-2 bp
Tssr35839	Chr3:135545502-135545520 (-)	519 bp