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Ptprjos1 Gene Detail
Summary
  • Symbol
    Ptprjos1
  • Name
    protein tyrosine phosphatase receptor type J, opposite strand 1
  • Synonyms
    4933423P22Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918408
    NCBI Gene: 71158
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:90309580-90318769 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 50.21 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    306 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918408
 lncRNA gene Chr2:90309580-90318769 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003603
 antisense lncRNA gene Chr2:91742161-91751358 (+)
A/J MGP_AJ_G0003585
 antisense lncRNA gene Chr2:88080644-88090389 (+)
AKR/J MGP_AKRJ_G0003563
 antisense lncRNA gene Chr2:90517765-90531052 (+)
BALB/cJ MGP_BALBcJ_G0003574
 antisense lncRNA gene Chr2:88238158-88247532 (+)
C3H/HeJ MGP_C3HHeJ_G0003521
 antisense lncRNA gene Chr2:90794240-90803433 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003712
 antisense lncRNA gene Chr2:94979821-94989014 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003221
 antisense lncRNA gene Chr2:84603169-84612087 (+)
CAST/EiJ MGP_CASTEiJ_G0003484
 antisense lncRNA gene Chr2:91296820-91306015 (+)
CBA/J MGP_CBAJ_G0003518
 antisense lncRNA gene Chr2:98210908-98220091 (+)
DBA/2J MGP_DBA2J_G0003526
 antisense lncRNA gene Chr2:87678569-87688265 (+)
FVB/NJ MGP_FVBNJ_G0003546
 antisense lncRNA gene Chr2:86778984-86789177 (+)
LP/J MGP_LPJ_G0003603
 antisense lncRNA gene Chr2:91931895-91941334 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003534
 antisense lncRNA gene Chr2:101279882-101291326 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003714
 antisense lncRNA gene Chr2:90561758-90572017 (+)
PWK/PhJ MGP_PWKPhJ_G0003439
 antisense lncRNA gene Chr2:87389465-87398828 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003383
 antisense lncRNA gene Chr2:90075872-90154225 (+)
WSB/EiJ MGP_WSBEiJ_G0003518
 antisense lncRNA gene Chr2:91147251-91156412 (+)



Homology
more
  • Human Ortholog
    PTPRJ-AS1, PTPRJ antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PTPRJ-AS1, PTPRJ antisense RNA 1
  • Links
    NCBI Gene ID: 104326192

  • Chr Location
    11p11.2; chr11:48014406-48015855 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Ptprjos1
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    23
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085471 Ensembl Gene Model | MGI Sequence Detail 9190 C57BL/6J ±  kb
transcript ENSMUST00000126219 Ensembl | MGI Sequence Detail 4595 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:7467379
References
more
  • Summaries
    All 16
    Phenotypes 6
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory