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Apobec4 Gene Detail
Summary
  • Symbol
    Apobec4
  • Name
    apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4
  • Synonyms
    4933431M11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918531
    NCBI Gene: 71281
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:152626302-152633295 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 65.01 cM, cytoband G2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    335 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918531
 protein coding gene Chr1:152626302-152633295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016589
 protein coding gene Chr1:157515668-157523791 (+)
A/J MGP_AJ_G0016571
 protein coding gene Chr1:151176351-151183174 (+)
AKR/J MGP_AKRJ_G0016536
 protein coding gene Chr1:155836649-155843723 (+)
BALB/cJ MGP_BALBcJ_G0016531
 protein coding gene Chr1:151749038-151756834 (+)
C3H/HeJ MGP_C3HHeJ_G0016356
 protein coding gene Chr1:155955677-155962650 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016992
 protein coding gene Chr1:162973957-162980883 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014701
 protein coding gene Chr1:143493182-143499938 (+)
CAST/EiJ MGP_CASTEiJ_G0015935
 protein coding gene Chr1:155458846-155465754 (+)
CBA/J MGP_CBAJ_G0016330
 protein coding gene Chr1:168704197-168711479 (+)
DBA/2J MGP_DBA2J_G0016436
 protein coding gene Chr1:150192296-150199273 (+)
FVB/NJ MGP_FVBNJ_G0016434
 protein coding gene Chr1:148678684-148685575 (+)
LP/J MGP_LPJ_G0016507
 protein coding gene Chr1:158630188-158637698 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016460
 protein coding gene Chr1:176354094-176360972 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017028
 protein coding gene Chr1:155624047-155632424 (+)
PWK/PhJ MGP_PWKPhJ_G0015721
 protein coding gene Chr1:149200330-149207625 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015508
 protein coding gene Chr1:154432561-154439471 (+)
WSB/EiJ MGP_WSBEiJ_G0015998
 protein coding gene Chr1:155688861-155696659 (+)



Homology
more
  • Human Ortholog
    APOBEC4, apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    APOBEC4, apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
  • Synonyms
    C1orf169
  • Links
    NCBI Gene ID: 403314
    neXtProt AC: NX_Q8WW27
    UniProt: Q8WW27

  • Chr Location
    chr1:183646275-183653316 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71281 NCBI Gene Model | MGI Sequence Detail 6994 C57BL/6J ±  kb
transcript NM_001081197 RefSeq | MGI Sequence Detail 1566 Not Specified  
polypeptide Q497M3 UniProt | EBI | MGI Sequence Detail 374 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory