5430400D12Rik Gene Detail

Summary

• Symbol
  5430400D12Rik
• Name
  RIKEN cDNA 5430400D12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918589
  NCBI Gene: 71339
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:79570471-79572269 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918589	lncRNA gene	Chr7:79570378-79576025 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004766	bidirectional promoter lncRNA gene	Chr7:81837885-81839683 (+)
A/J	MGP_AJ_G0004747	bidirectional promoter lncRNA gene	Chr7:79949065-79950863 (+)
AKR/J	MGP_AKRJ_G0004726	bidirectional promoter lncRNA gene	Chr7:81666021-81667819 (+)
BALB/cJ	MGP_BALBcJ_G0004729	bidirectional promoter lncRNA gene	Chr7:79631801-79633599 (+)
C3H/HeJ	MGP_C3HHeJ_G0004677	bidirectional promoter lncRNA gene	Chr7:82319200-82320998 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004879	bidirectional promoter lncRNA gene	Chr7:85046592-85048390 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004316	bidirectional promoter lncRNA gene	Chr7:82474825-82476589 (+)
CAST/EiJ	MGP_CASTEiJ_G0004631	bidirectional promoter lncRNA gene	Chr7:73190607-73192406 (+)
CBA/J	MGP_CBAJ_G0004670	bidirectional promoter lncRNA gene	Chr7:87887120-87888918 (+)
DBA/2J	MGP_DBA2J_G0004688	bidirectional promoter lncRNA gene	Chr7:78505558-78507356 (+)
FVB/NJ	MGP_FVBNJ_G0004707	bidirectional promoter lncRNA gene	Chr7:78418068-78419866 (+)
LP/J	MGP_LPJ_G0004767	bidirectional promoter lncRNA gene	Chr7:83092055-83093853 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004692	bidirectional promoter lncRNA gene	Chr7:88048982-88050780 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004882	bidirectional promoter lncRNA gene	Chr7:81106974-81108772 (+)
PWK/PhJ	MGP_PWKPhJ_G0004584	bidirectional promoter lncRNA gene	Chr7:71685041-71686842 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004517	bidirectional promoter lncRNA gene	Chr7:68109720-68111521 (+)
WSB/EiJ	MGP_WSBEiJ_G0004676	bidirectional promoter lncRNA gene	Chr7:81428347-81430145 (+)

Homology

• Gene Tree
  5430400D12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  2
• Genomic Mutations
  3 involving 5430400D12Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097699 (Evidence)
• NCBI Gene
  71339

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097699	Ensembl Gene Model | MGI Sequence Detail	1799	C57BL/6J
transcript	ENSMUST00000181717	Ensembl | MGI Sequence Detail	1690	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Phenotypes 13
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9