5430427M07Rik Gene Detail

Summary

• Symbol
  5430427M07Rik
• Name
  RIKEN cDNA 5430427M07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918599
  NCBI Gene: 71349
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:91012622-91023410 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 44.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  421 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918599	lncRNA gene	Chr12:91012622-91046681 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003154	antisense lncRNA gene	Chr12:92179359-92204093 (+)
A/J	MGP_AJ_G0003131	antisense lncRNA gene	Chr12:88723753-88747524 (+)
AKR/J	MGP_AKRJ_G0003111	antisense lncRNA gene	Chr12:91104908-91133622 (+)
BALB/cJ	MGP_BALBcJ_G0003118	antisense lncRNA gene	Chr12:89013595-89042468 (+)
C3H/HeJ	MGP_C3HHeJ_G0003074	antisense lncRNA gene	Chr12:91718795-91742617 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003261	antisense lncRNA gene	Chr12:94895301-94925516 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002794	antisense lncRNA gene	Chr12:86200499-86226701 (+)
CAST/EiJ	MGP_CASTEiJ_G0003043	antisense lncRNA gene	Chr12:86634463-86660607 (+)
CBA/J	MGP_CBAJ_G0003071	antisense lncRNA gene	Chr12:98453967-98480974 (+)
DBA/2J	MGP_DBA2J_G0003076	antisense lncRNA gene	Chr12:88201010-88224782 (+)
FVB/NJ	MGP_FVBNJ_G0003096	antisense lncRNA gene	Chr12:87068513-87095211 (+)
LP/J	MGP_LPJ_G0003151	antisense lncRNA gene	Chr12:91966026-91992830 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003085	antisense lncRNA gene	Chr12:101232256-101259826 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003265	antisense lncRNA gene	Chr12:90716428-90746608 (+)
PWK/PhJ	MGP_PWKPhJ_G0003001	antisense lncRNA gene	Chr12:82784034-82812566 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002945	antisense lncRNA gene	Chr12:84888642-84914018 (+)
WSB/EiJ	MGP_WSBEiJ_G0003074	antisense lncRNA gene	Chr12:91449415-91473244 (+)

Homology

• Gene Tree
  5430427M07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5430427M07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085004 (Evidence)
• NCBI Gene
  71349

Representative Sequences			Length	Strain/Species
genomic	71349	NCBI Gene Model | MGI Sequence Detail	10789	C57BL/6J
transcript	NR_045858	RefSeq | MGI Sequence Detail	1023	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573