5430402O13Rik Gene Detail

Summary

• Symbol
  5430402O13Rik
• Name
  RIKEN cDNA 5430402O13 gene
• Synonyms
  3110047M22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918631
  NCBI Gene: 73183
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:50543623-50571845 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 24.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  657 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918631	lncRNA gene	Chr6:50543623-50601379 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004268	antisense lncRNA gene	Chr6:49687829-49716972 (+)
A/J	MGP_AJ_G0004246	antisense lncRNA gene	Chr6:47367620-47395846 (+)
AKR/J	MGP_AKRJ_G0004227	antisense lncRNA gene	Chr6:49032948-49061156 (+)
BALB/cJ	MGP_BALBcJ_G0004233	antisense lncRNA gene	Chr6:47713666-47741897 (+)
C3H/HeJ	MGP_C3HHeJ_G0004181	antisense lncRNA gene	Chr6:49055354-49084554 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004382	antisense lncRNA gene	Chr6:50801334-50829538 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003855	antisense lncRNA gene	Chr6:44974747-45000732 (+)
CAST/EiJ	MGP_CASTEiJ_G0004143	antisense lncRNA gene	Chr6:48775673-48805353 (+)
CBA/J	MGP_CBAJ_G0004175	antisense lncRNA gene	Chr6:52940626-52968852 (+)
DBA/2J	MGP_DBA2J_G0004191	antisense lncRNA gene	Chr6:47282638-47311152 (+)
FVB/NJ	MGP_FVBNJ_G0004207	antisense lncRNA gene	Chr6:46919870-46948096 (+)
LP/J	MGP_LPJ_G0004269	antisense lncRNA gene	Chr6:49644460-49672774 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004197	antisense lncRNA gene	Chr6:55652112-55681977 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004379	antisense lncRNA gene	Chr6:48951918-48980179 (+)
PWK/PhJ	MGP_PWKPhJ_G0004096	antisense lncRNA gene	Chr6:46858214-46886705 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004040	antisense lncRNA gene	Chr6:48272723-48306502 (+)
WSB/EiJ	MGP_WSBEiJ_G0004179	antisense lncRNA gene	Chr6:48918093-48947601 (+)

Homology

• Gene Tree
  5430402O13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000085776 (Evidence)
• NCBI Gene
  73183

Representative Sequences			Length	Strain/Species
genomic	73183	NCBI Gene Model | MGI Sequence Detail	28223	C57BL/6J
transcript	NR_015581	RefSeq | MGI Sequence Detail	1007	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1920433

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5430402O13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56423	Chr6:50543700-50543730 (+)	92 bp