Krtap28-13 Gene Detail

Summary

• Symbol
  Krtap28-13
• Name
  keratin associated protein 28-13
• Synonyms
  5530401N06Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1918636
  NCBI Gene: 71386
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:83038651-83039642 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 42.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918636	protein coding gene	Chr1:83038651-83039642 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016222	protein coding gene	Chr1:84020942-84021933 (+)
A/J	MGP_AJ_G0016205	protein coding gene	Chr1:81033713-81034719 (+)
AKR/J	MGP_AKRJ_G0016162	protein coding gene	Chr1:83237132-83238153 (+)
BALB/cJ	MGP_BALBcJ_G0016160	protein coding gene	Chr1:81181936-81183394 (+)
C3H/HeJ	MGP_C3HHeJ_G0015990	protein coding gene	Chr1:83619815-83620806 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016613	protein coding gene	Chr1:87270910-87271916 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014333	protein coding gene	Chr1:76235572-76236556 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0015964	protein coding gene	Chr1:90062740-90063731 (+)
DBA/2J	MGP_DBA2J_G0016065	protein coding gene	Chr1:80305901-80307169 (+)
FVB/NJ	MGP_FVBNJ_G0016068	protein coding gene	Chr1:79422881-79423833 (+)
LP/J	MGP_LPJ_G0016138	protein coding gene	Chr1:85132475-85133466 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016088	protein coding gene	Chr1:93419493-93420484 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016660	protein coding gene	Chr1:83418409-83419400 (+)
PWK/PhJ	MGP_PWKPhJ_G0015361	protein coding gene	Chr1:79763048-79764018 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015139	protein coding gene	Chr1:82602348-82603300 (+)
WSB/EiJ	MGP_WSBEiJ_G0015636	protein coding gene	Chr1:83201562-83203798 (+)

Homology

• Gene Tree
  Krtap28-13
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Krtap28-13
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS78637.1

• Ensembl
  ENSMUSG00000101315 (Evidence)
• NCBI Gene
  71386

Representative Sequences			Length	Strain/Species
genomic	71386	NCBI Gene Model | MGI Sequence Detail	992	C57BL/6J
transcript	NM_027778	RefSeq | MGI Sequence Detail	992	C57BL/6
polypeptide	NP_082054	RefSeq | MGI Sequence Detail	138	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:139791 Wu DD, et al., Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. BMC Evol Biol. 2008;8:241

TSS for Krtap28-13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7642	Chr1:83038648-83038654 (+)	0 bp