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Cdcp3 Gene Detail
Summary
  • Symbol
    Cdcp3
  • Name
    CUB domain containing protein 3
  • Synonyms
    5430419D17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918645
    NCBI Gene: 71395
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:130776131-130908180 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 73.51 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3997 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918645
 protein coding gene Chr7:130776131-130908181 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033098
 protein coding gene Chr7:135778859-135864365 (+)
A/J MGP_AJ_G0033080
 protein coding gene Chr7:132081493-132158267 (+)
AKR/J MGP_AKRJ_G0033012
 protein coding gene Chr7:135588350-135663821 (+)
BALB/cJ MGP_BALBcJ_G0033081
 protein coding gene Chr7:131772925-131850445 (+)
C3H/HeJ MGP_C3HHeJ_G0032795
 protein coding gene Chr7:135446136-135521803 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033592
 protein coding gene Chr7:140970219-141053024 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030563
 protein coding gene Chr7:133199847-133496492 (+)
CAST/EiJ MGP_CASTEiJ_G0032125
 protein coding gene Chr7:127291138-127429908 (+)
CBA/J MGP_CBAJ_G0032768
 protein coding gene Chr7:145852140-145947050 (+)
DBA/2J MGP_DBA2J_G0032920
 protein coding gene Chr7:130067973-130141613 (+)
FVB/NJ MGP_FVBNJ_G0032873
 protein coding gene Chr7:129930435-130008708 (+)
LP/J MGP_LPJ_G0033014
 protein coding gene Chr7:137281124-137362799 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032905
 protein coding gene Chr7:146776373-146873046 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033612
 protein coding gene Chr7:134569529-134663631 (+)
PWK/PhJ MGP_PWKPhJ_G0031831
 protein coding gene Chr7:123106760-123238168 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031677
 protein coding gene Chr7:121363301-121495276 (+)
WSB/EiJ MGP_WSBEiJ_G0032236
 protein coding gene Chr7:135483270-135620306 (+)



Homology
more
  • Human Ortholog
    DMBT1L1, deleted in malignant brain tumors 1 like 1 (pseudogene)
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    DMBT1L1, deleted in malignant brain tumors 1 like 1 (pseudogene)
  • Synonyms
    DMBT1P1
  • Links
    NCBI Gene ID: 375940

  • Chr Location
    10q26.13; chr10:122729429-122826448 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000006204 Ensembl Gene Model | MGI Sequence Detail 132050 C57BL/6J ±  kb
    transcript ENSMUST00000208921 Ensembl | MGI Sequence Detail 8578 Not Applicable  
    polypeptide ENSMUSP00000150784 Ensembl | MGI Sequence Detail 2696 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:6331395
    References
    more
    • Summaries
      All 17
      Gene Ontology 1
      Phenotypes 3
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory