8430432A02Rik Gene Detail

Summary

• Symbol
  8430432A02Rik
• Name
  RIKEN cDNA 8430432A02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918774
  NCBI Gene: 108167597
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:43131748-43132995 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 22.25 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918774	lncRNA gene	Chr1:43131440-43133002 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002676	antisense lncRNA gene	Chr1:42059622-42060869 (+)
A/J	MGP_AJ_G0002652	antisense lncRNA gene	Chr1:40799390-40800637 (+)
AKR/J	MGP_AKRJ_G0002632	antisense lncRNA gene	Chr1:41333348-41334595 (+)
BALB/cJ	MGP_BALBcJ_G0002638	antisense lncRNA gene	Chr1:40474361-40475608 (+)
C3H/HeJ	MGP_C3HHeJ_G0002598	antisense lncRNA gene	Chr1:41714178-41715425 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002782	antisense lncRNA gene	Chr1:43793317-43794564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002329	antisense lncRNA gene	Chr1:37631919-37633188 (+)
CAST/EiJ	MGP_CASTEiJ_G0002571	antisense lncRNA gene	Chr1:41700938-41702189 (+)
CBA/J	MGP_CBAJ_G0002593	antisense lncRNA gene	Chr1:45071096-45072343 (+)
DBA/2J	MGP_DBA2J_G0002598	antisense lncRNA gene	Chr1:40075527-40076774 (+)
FVB/NJ	MGP_FVBNJ_G0002618	antisense lncRNA gene	Chr1:39603411-39604658 (+)
LP/J	MGP_LPJ_G0002678	antisense lncRNA gene	Chr1:42405329-42406576 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002609	antisense lncRNA gene	Chr1:47067157-47068404 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002787	antisense lncRNA gene	Chr1:41545712-41546959 (+)
PWK/PhJ	MGP_PWKPhJ_G0002528	antisense lncRNA gene	Chr1:39959585-39960837 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002482	antisense lncRNA gene	Chr1:41540442-41541692 (+)
WSB/EiJ	MGP_WSBEiJ_G0002600	antisense lncRNA gene	Chr1:41583014-41584261 (+)

Homology

• Gene Tree
  8430432A02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 8430432A02Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000041878 (Evidence)
• NCBI Gene
  108167597

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000041878	Ensembl Gene Model | MGI Sequence Detail	1248	C57BL/6J
transcript	ENSMUST00000039080	Ensembl | MGI Sequence Detail	1248	Not Applicable
polypeptide	Q9CRQ4	UniProt | EBI | MGI Sequence Detail	167	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573