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Atp5pd Gene Detail
Summary
  • Symbol
    Atp5pd
  • Name
    ATP synthase peripheral stalk subunit d
  • Synonyms
    0610009D10Rik, Atp5h
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918929
    NCBI Gene: 71679
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115306517-115310775 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 80.84 cM, cytoband E2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918929
 protein coding gene Chr11:115306515-115310788 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019385
 protein coding gene Chr11:119435991-119441661 (-)
A/J MGP_AJ_G0019354
 protein coding gene Chr11:114222925-114227332 (-)
AKR/J MGP_AKRJ_G0019324
 protein coding gene Chr11:117630105-117634390 (-)
BALB/cJ MGP_BALBcJ_G0019328
 protein coding gene Chr11:114636283-114640551 (-)
C3H/HeJ MGP_C3HHeJ_G0019134
 protein coding gene Chr11:117980437-117985702 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019778
 protein coding gene Chr11:123077864-123083536 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017401
 protein coding gene Chr11:111261656-111266222 (-)
CAST/EiJ MGP_CASTEiJ_G0018689
 protein coding gene Chr11:119292455-119298539 (-)
CBA/J MGP_CBAJ_G0019106
 protein coding gene Chr11:127932779-127937064 (-)
DBA/2J MGP_DBA2J_G0019217
 protein coding gene Chr11:113658630-113662896 (-)
FVB/NJ MGP_FVBNJ_G0019209
 protein coding gene Chr11:113134190-113138462 (-)
LP/J MGP_LPJ_G0019287
 protein coding gene Chr11:119821026-119827300 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019242
 protein coding gene Chr11:127108334-127112611 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019816
 protein coding gene Chr11:118286167-118290444 (-)
PWK/PhJ MGP_PWKPhJ_G0018453
 protein coding gene Chr11:114941267-114945522 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018246
 protein coding gene Chr11:118032189-118036442 (-)
WSB/EiJ MGP_WSBEiJ_G0018741
 protein coding gene Chr11:118234858-118239125 (-)



Homology
more
  • Human Ortholog
    ATP5PD, ATP synthase peripheral stalk subunit d
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP5PD, ATP synthase peripheral stalk subunit d
  • Synonyms
    APT5H, ATP5H, ATPQ
  • Links
    NCBI Gene ID: 10476
    neXtProt AC: NX_O75947
    UniProt: O75947

  • Chr Location
    17q25.1; chr17:75038863-75046985 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    94
  • cDNA Data
    68
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71679 NCBI Gene Model | MGI Sequence Detail 4259 C57BL/6J ±  kb
transcript NM_001417934 RefSeq | MGI Sequence Detail 757 C57BL/6  
polypeptide Q9DCX2 UniProt | EBI | MGI Sequence Detail 161 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004459 ATP synthase subunit d, mitochondrial
    (term hierarchy)
  • InterPro Domains
    IPR008689 ATP synthase, F0 complex, subunit D, mitochondrial
    IPR036228 ATP synthase, F0 complex, subunit D superfamily, mitochondrial
  • GlyGen
    Q9DCX2 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 69
    cDNA 68
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:7469641
References
more
  • Summaries
    All 40
    Developmental Gene Expression 2
    Gene Ontology 11
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:301602 Li Y, et al., MFSD7C switches mitochondrial ATP synthesis to thermogenesis in response to heme. Nat Commun. 2020 Sep 24;11(1):4837
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory