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Rnf180 Gene Detail
Summary
  • Symbol
    Rnf180
  • Name
    ring finger protein 180
  • Synonyms
    3110001E11Rik, Rines
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919066
    NCBI Gene: 71816
  • Alliance
    gene page
  • Transcription Start Sites
    19 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:105267075-105431406 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 56.92 cM, cytoband D1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4821 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919066
 protein coding gene Chr13:105266509-105431406 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020914
 protein coding gene Chr13:107267417-107417646 (-)
A/J MGP_AJ_G0020865
 protein coding gene Chr13:103082016-103227496 (-)
AKR/J MGP_AKRJ_G0020840
 protein coding gene Chr13:106215078-106357468 (-)
BALB/cJ MGP_BALBcJ_G0020865
 protein coding gene Chr13:103790365-103942289 (-)
C3H/HeJ MGP_C3HHeJ_G0020654
 protein coding gene Chr13:105971192-106119986 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021299
 protein coding gene Chr13:110491339-110645533 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018869
 protein coding gene Chr13:98658796-98799463 (-)
CAST/EiJ MGP_CASTEiJ_G0020173
 protein coding gene Chr13:105488674-105653006 (-)
CBA/J MGP_CBAJ_G0020616
 protein coding gene Chr13:114796360-114953694 (-)
DBA/2J MGP_DBA2J_G0020740
 protein coding gene Chr13:102840358-102986544 (-)
FVB/NJ MGP_FVBNJ_G0020722
 protein coding gene Chr13:101535408-101680404 (-)
LP/J MGP_LPJ_G0020814
 protein coding gene Chr13:107294671-107449925 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020750
 protein coding gene Chr13:115037882-115193618 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021338
 protein coding gene Chr13:105699154-105856467 (-)
PWK/PhJ MGP_PWKPhJ_G0019926
 protein coding gene Chr13:101577976-101746747 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019748
 protein coding gene Chr13:101963167-102079011 (-)
WSB/EiJ MGP_WSBEiJ_G0020231
 protein coding gene Chr13:106171042-106318602 (-)



Homology
more
  • Human Ortholog
    RNF180, ring finger protein 180
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNF180, ring finger protein 180
  • Synonyms
    RINES
  • Links
    NCBI Gene ID: 285671
    neXtProt AC: NX_Q86T96
    UniProt: Q86T96

  • Chr Location
    5q12.3; chr5:64165351-64372869 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Knock-out mice show impaired stress responses, enhanced anxiety, and affiliative behavior. Norepinephrine and serotonin levels are decreased in the locus ceruleus, prefrontal cortex, and amygdala and MAO-A enzyme activity is enhanced in the locus ceruleus.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    921
  • Tissues
    101
  • cDNA Data
    21
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 71816 NCBI Gene Model | MGI Sequence Detail 164332 C57BL/6J ±  kb
    transcript NM_027934 RefSeq | MGI Sequence Detail 3785 C57BL/6  
    polypeptide Q3U827 UniProt | EBI | MGI Sequence Detail 592 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 21

      Microarray probesets 3
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 5
      Gene Ontology 5
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory