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Clip4 Gene Detail
Summary
  • Symbol
    Clip4
  • Name
    CAP-GLY domain containing linker protein family, member 4
  • Synonyms
    1700024K14Rik, 1700074B05Rik, 4833417L20Rik, 5830409B12Rik, Rsnl2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919100
    NCBI Gene: 78785
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:72076674-72171205 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 42.90 cM, cytoband E2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3071 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919100
 protein coding gene Chr17:72075468-72171268 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024014
 protein coding gene Chr17:74261832-74337519 (+)
A/J MGP_AJ_G0023972
 protein coding gene Chr17:72003124-72082972 (+)
AKR/J MGP_AKRJ_G0023941
 protein coding gene Chr17:72986368-73075250 (+)
BALB/cJ MGP_BALBcJ_G0023973
 protein coding gene Chr17:71941451-72016812 (+)
C3H/HeJ MGP_C3HHeJ_G0023737
 protein coding gene Chr17:73936733-74015630 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024419
 protein coding gene Chr17:76962177-77045164 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021864
 protein coding gene Chr17:67753379-67830637 (+)
CAST/EiJ MGP_CASTEiJ_G0023218
 protein coding gene Chr17:74390950-74473044 (+)
CBA/J MGP_CBAJ_G0023712
 protein coding gene Chr17:80170586-80247647 (+)
DBA/2J MGP_DBA2J_G0023841
 protein coding gene Chr17:70659809-70738808 (+)
FVB/NJ MGP_FVBNJ_G0023807
 protein coding gene Chr17:70138390-70215926 (+)
LP/J MGP_LPJ_G0023923
 protein coding gene Chr17:74993244-75074397 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023835
 protein coding gene Chr17:80038675-80119414 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024463
 protein coding gene Chr17:73508268-73582442 (+)
PWK/PhJ MGP_PWKPhJ_G0022964
 protein coding gene Chr17:69976759-70061569 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022775
 protein coding gene Chr17:70217179-70294760 (+)
WSB/EiJ MGP_WSBEiJ_G0023285
 protein coding gene Chr17:74341160-74418484 (+)



Homology
more
  • Human Ortholog
    CLIP4, CAP-Gly domain containing linker protein family member 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLIP4, CAP-Gly domain containing linker protein family member 4
  • Synonyms
    RSNL2
  • Links
    NCBI Gene ID: 79745
    neXtProt AC: NX_Q8N3C7
    UniProt: Q8N3C7

  • Chr Location
    2p23.2; chr2:29097705-29199777 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    722
  • Tissues
    3
  • cDNA Data
    47
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78785 NCBI Gene Model | MGI Sequence Detail 94532 C57BL/6J ±  kb
transcript NM_030179 RefSeq | MGI Sequence Detail 4055 Not Specified  
polypeptide Q8CI96 UniProt | EBI | MGI Sequence Detail 704 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 47
    cDNA 47

    Microarray probesets 10
Other
Accession IDs
less
MGI:1921990, MGI:1925714, MGI:1926035
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory