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1600012P17Rik Gene Detail
Summary
  • Symbol
    1600012P17Rik
  • Name
    RIKEN cDNA 1600012P17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919275
    NCBI Gene: 72025
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:158795271-158808032 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 68.49 cM, cytoband H1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    372 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919275
 lncRNA gene Chr1:158795271-158808033 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005009
 lincRNA gene Chr1:164089609-164104564 (-)
A/J MGP_AJ_G0004991
 lincRNA gene Chr1:157429725-157442460 (-)
AKR/J MGP_AKRJ_G0004969
 lincRNA gene Chr1:162251342-162264069 (-)
BALB/cJ MGP_BALBcJ_G0004973
 lincRNA gene Chr1:157950678-157963442 (-)
C3H/HeJ MGP_C3HHeJ_G0004921
 lincRNA gene Chr1:162403397-162416146 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005123
 lincRNA gene Chr1:169700230-169712992 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004534
 lincRNA gene Chr1:149592269-149605167 (-)
CAST/EiJ MGP_CASTEiJ_G0004869
 lincRNA gene Chr1:161994130-162006857 (-)
CBA/J MGP_CBAJ_G0004912
 lincRNA gene Chr1:175682746-175695509 (-)
DBA/2J MGP_DBA2J_G0004931
 lincRNA gene Chr1:156380741-156393498 (-)
FVB/NJ MGP_FVBNJ_G0004952
 lincRNA gene Chr1:154844443-154857183 (-)
LP/J MGP_LPJ_G0005009
 lincRNA gene Chr1:165192284-165205043 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004936
 lincRNA gene Chr1:183226018-183238749 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005128
 lincRNA gene Chr1:162105611-162118373 (-)
PWK/PhJ MGP_PWKPhJ_G0004821
 lincRNA gene Chr1:155513719-155530335 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004747
 lincRNA gene Chr1:160879071-160892913 (-)
WSB/EiJ MGP_WSBEiJ_G0004916
 lincRNA gene Chr1:162219748-162232497 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    753
  • Tissues
    21
  • cDNA Data
    42
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 72025 NCBI Gene Model | MGI Sequence Detail 12762 C57BL/6J ±  kb
transcript NR_163823 RefSeq | MGI Sequence Detail 2474 C57BL/6  
polypeptide Q9DAY1 UniProt | EBI | MGI Sequence Detail 330 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR053368 Viral Envelope Glycoprotein
Molecular
Reagents
less
  • All nucleic 44
    cDNA 42
    Primer pair 2

    Microarray probesets 3
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:327983 Wang J, et al., Placenta-specific lncRNA 1600012P17Rik is expressed in spongiotrophoblast and glycogen trophoblast cells of mouse placenta. Histochem Cell Biol. 2022 Jul;158(1):65-78
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory