2610507I01Rik Gene Detail

Summary

• Symbol
  2610507I01Rik
• Name
  RIKEN cDNA 2610507I01 gene
• Synonyms
  5033414D05Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1919453
  NCBI Gene: 72203
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:59088619-59093257 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919453	lncRNA gene	Chr11:59087691-59093263 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015174	unclassified non-coding RNA gene	Chr11:59008674-59011014 (-)
A/J	MGP_AJ_G0015148	unclassified non-coding RNA gene	Chr11:56753242-56755582 (-)
AKR/J	MGP_AKRJ_G0015111	unclassified non-coding RNA gene	Chr11:58658532-58660872 (-)
BALB/cJ	MGP_BALBcJ_G0015110	unclassified non-coding RNA gene	Chr11:57115784-57118103 (-)
C3H/HeJ	MGP_C3HHeJ_G0014934	unclassified non-coding RNA gene	Chr11:58542089-58544429 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015567	unclassified non-coding RNA gene	Chr11:60890331-60892880 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013311	unclassified non-coding RNA gene	Chr11:54014185-54016571 (-)
CAST/EiJ	MGP_CASTEiJ_G0014487	unclassified non-coding RNA gene	Chr11:58660493-58662840 (-)
CBA/J	MGP_CBAJ_G0014913	unclassified non-coding RNA gene	Chr11:63542152-63544492 (-)
DBA/2J	MGP_DBA2J_G0015006	unclassified non-coding RNA gene	Chr11:56434824-56437156 (-)
FVB/NJ	MGP_FVBNJ_G0015018	unclassified non-coding RNA gene	Chr11:56079337-56081677 (-)
LP/J	MGP_LPJ_G0015087	unclassified non-coding RNA gene	Chr11:59612122-59614726 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015044	unclassified non-coding RNA gene	Chr11:64690941-64693281 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015606	unclassified non-coding RNA gene	Chr11:58679717-58683442 (-)
PWK/PhJ	MGP_PWKPhJ_G0014279	unclassified non-coding RNA gene	Chr11:57015109-57017664 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014066	unclassified non-coding RNA gene	Chr11:58476398-58478717 (-)
WSB/EiJ	MGP_WSBEiJ_G0014590	unclassified non-coding RNA gene	Chr11:58368840-58371180 (-)

Homology

• Gene Tree
  2610507I01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 2610507I01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  16

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000085882 (Evidence)
• NCBI Gene
  72203

Representative Sequences			Length	Strain/Species
genomic	72203	NCBI Gene Model | MGI Sequence Detail	4639	C57BL/6J
transcript	NR_037964	RefSeq | MGI Sequence Detail	2905	C57BL/6

Molecular
Reagents

• All nucleic 16

  cDNA 16

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1923243

References

• Summaries
  All 17

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 2610507I01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108210	Chr11:59093202-59093220 (-)	46 bp
Tssr108209	Chr11:59092995-59093035 (-)	242 bp
Tssr108208	Chr11:59092967-59092980 (-)	283 bp
Tssr108207	Chr11:59092538-59092565 (-)	705 bp
Tssr108206	Chr11:59092508-59092523 (-)	741 bp