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1700001J11Rik Pseudogene Detail
Summary
  • Symbol
    1700001J11Rik
  • Name
    RIKEN cDNA 1700001J11 gene
  • Feature Type
    pseudogene
  • IDs
    MGI:1919474
    NCBI Gene: 72224
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:39961862-39964324 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 21.34 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    162 from dbSNP Build 142
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919474
 pseudogene Chr9:39961854-39964324 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0039753
 pseudogene Chr9:37252215-37254878 (+)
AKR/J MGP_AKRJ_G0039677
 pseudogene Chr9:37974056-37977092 (+)
BALB/cJ MGP_BALBcJ_G0039721
 pseudogene Chr9:37024455-37027134 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040284
 pseudogene Chr9:39475140-39480109 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036910
 pseudogene Chr9:36928792-36929550 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0039549
 pseudogene Chr9:37221657-37224321 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    12
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000101963 Ensembl Gene Model | MGI Sequence Detail 2463 C57BL/6J ±  kb
transcript ENSMUST00000190330 Ensembl | MGI Sequence Detail 2463 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory