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Katnbl1 Gene Detail
Summary
  • Symbol
    Katnbl1
  • Name
    katanin p80 subunit B like 1
  • Synonyms
    2410042D21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919675
    NCBI Gene: 72425
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:112209556-112244582 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 57.02 cM, cytoband E4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    807 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J no annotation
129S1/SvImJ MGP_129S1SvImJ_G0026290
 protein coding gene Chr2:114830975-114866703 (+)
A/J MGP_AJ_G0026251
 protein coding gene Chr2:110120750-110156562 (+)
AKR/J MGP_AKRJ_G0026230
 protein coding gene Chr2:113207723-113258499 (+)
BALB/cJ MGP_BALBcJ_G0026264
 protein coding gene Chr2:110386818-110421849 (+)
C3H/HeJ MGP_C3HHeJ_G0026009
 protein coding gene Chr2:113610352-113646368 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026711
 protein coding gene Chr2:118632206-118670760 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024091
 protein coding gene Chr2:105360308-105396503 (+)
CAST/EiJ MGP_CASTEiJ_G0025472
 protein coding gene Chr2:113880155-113915249 (+)
CBA/J MGP_CBAJ_G0025986
 protein coding gene Chr2:122765907-122801599 (+)
DBA/2J MGP_DBA2J_G0026125
 protein coding gene Chr2:109585015-109622417 (+)
FVB/NJ MGP_FVBNJ_G0026087
 protein coding gene Chr2:108461978-108497958 (+)
LP/J MGP_LPJ_G0026226
 protein coding gene Chr2:115109404-115148652 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026106
 protein coding gene Chr2:127173713-127208876 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026766
 protein coding gene Chr2:113280650-113314080 (+)
PWK/PhJ MGP_PWKPhJ_G0025208
 protein coding gene Chr2:109085684-109123508 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025007
 protein coding gene Chr2:112472276-112507886 (+)
WSB/EiJ MGP_WSBEiJ_G0025541
 protein coding gene Chr2:114089622-114124332 (+)



Homology
more
  • Human Ortholog
    KATNBL1, katanin regulatory subunit B1 like 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KATNBL1, katanin regulatory subunit B1 like 1
  • Synonyms
    C15orf29
  • Links
    NCBI Gene ID: 79768
    neXtProt AC: NX_Q9H079
    UniProt: Q9H079

  • Chr Location
    15q14; chr15:34140674-34210096 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Katnbl1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    72 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    54
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72425 NCBI Gene Model | MGI Sequence Detail 35027 C57BL/6J ±  kb
transcript NM_024254 RefSeq | MGI Sequence Detail 2883 C57BL/6  
polypeptide Q9CWJ3 UniProt | EBI | MGI Sequence Detail 299 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 54
    cDNA 54

    Microarray probesets 7
Other
Accession IDs
less
MGI:2138978, MGI:3034275, MGI:3034932
References
more
  • Summaries
    All 36
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory