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Ccdc71 Gene Detail
Summary
  • Symbol
    Ccdc71
  • Name
    coiled-coil domain containing 71
  • Synonyms
    2600016J21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919704
    NCBI Gene: 72454
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108337726-108343137 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    238 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919704
 protein coding gene Chr9:108329701-108343145 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035299
 protein coding gene Chr9:110419176-110424590 (+)
A/J MGP_AJ_G0035278
 protein coding gene Chr9:106372638-106378049 (+)
AKR/J MGP_AKRJ_G0035210
 protein coding gene Chr9:109031148-109036559 (+)
BALB/cJ MGP_BALBcJ_G0035272
 protein coding gene Chr9:106069895-106075306 (+)
C3H/HeJ MGP_C3HHeJ_G0034982
 protein coding gene Chr9:109422073-109427484 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035792
 protein coding gene Chr9:113435363-113440774 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032690
 protein coding gene Chr9:103801921-103807236 (+)
CAST/EiJ MGP_CASTEiJ_G0034293
 protein coding gene Chr9:109397225-109402685 (+)
CBA/J MGP_CBAJ_G0034950
 protein coding gene Chr9:117421813-117427241 (+)
DBA/2J MGP_DBA2J_G0035111
 protein coding gene Chr9:105826595-105832006 (+)
FVB/NJ MGP_FVBNJ_G0035059
 protein coding gene Chr9:104592855-104598266 (+)
LP/J MGP_LPJ_G0035187
 protein coding gene Chr9:110613810-110619228 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035098
 protein coding gene Chr9:119004454-119009865 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035813
 protein coding gene Chr9:109318222-109323633 (+)
PWK/PhJ MGP_PWKPhJ_G0034000
 protein coding gene Chr9:106156881-106162431 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033835
 protein coding gene Chr9:109375874-109381367 (+)
WSB/EiJ MGP_WSBEiJ_G0034414
 protein coding gene Chr9:109204416-109209827 (+)



Homology
more
  • Human Ortholog
    CCDC71, coiled-coil domain containing 71
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC71, coiled-coil domain containing 71
  • Links
    NCBI Gene ID: 64925
    neXtProt AC: NX_Q8IV32
    UniProt: Q8IV32

  • Chr Location
    3p21.31; chr3:49162535-49166331 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    45
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049305 Ensembl Gene Model | MGI Sequence Detail 5412 C57BL/6J ±  kb
transcript ENSMUST00000061209 Ensembl | MGI Sequence Detail 3092 Not Applicable  
polypeptide ENSMUSP00000057891 Ensembl | MGI Sequence Detail 433 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 4
References
more
  • Summaries
    All 26
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory