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Skida1 Gene Detail
Summary
  • Symbol
    Skida1
  • Name
    SKI/DACH domain containing 1
  • Synonyms
    2810030E01Rik, 5730507N06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919918
    NCBI Gene: 72668
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:18048510-18053627 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 12.83 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919918
 protein coding gene Chr2:18045487-18053862 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025372
 protein coding gene Chr2:15709698-15718077 (-)
A/J MGP_AJ_G0025350
 protein coding gene Chr2:15080389-15088786 (-)
AKR/J MGP_AKRJ_G0025318
 protein coding gene Chr2:15582622-15590981 (-)
BALB/cJ MGP_BALBcJ_G0025345
 protein coding gene Chr2:15110391-15118757 (-)
C3H/HeJ MGP_C3HHeJ_G0025105
 protein coding gene Chr2:15490288-15498663 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025788
 protein coding gene Chr2:16086022-16094363 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023203
 protein coding gene Chr2:14509865-14518192 (-)
CAST/EiJ MGP_CASTEiJ_G0024569
 protein coding gene Chr2:15458090-15466457 (-)
CBA/J MGP_CBAJ_G0025084
 protein coding gene Chr2:16825841-16834211 (-)
DBA/2J MGP_DBA2J_G0025216
 protein coding gene Chr2:15011112-15019471 (-)
FVB/NJ MGP_FVBNJ_G0025179
 protein coding gene Chr2:14817097-14825564 (-)
LP/J MGP_LPJ_G0025303
 protein coding gene Chr2:15583613-15591979 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025210
 protein coding gene Chr2:16762422-16770790 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025846
 protein coding gene Chr2:15517751-15526138 (-)
PWK/PhJ MGP_PWKPhJ_G0024318
 protein coding gene Chr2:14856902-14865354 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024118
 protein coding gene Chr2:15639189-15647557 (-)
WSB/EiJ MGP_WSBEiJ_G0024639
 protein coding gene Chr2:15615215-15623574 (-)



Homology
more
  • Human Ortholog
    SKIDA1, SKI/DACH domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SKIDA1, SKI/DACH domain containing 1
  • Synonyms
    C10orf140, DLN-1
  • Links
    NCBI Gene ID: 387640
    neXtProt AC: NX_Q1XH10
    UniProt: Q1XH10

  • Chr Location
    10p12.31; chr10:21513475-21526368 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1026
  • Tissues
    18
  • cDNA Data
    9
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 72668 NCBI Gene Model | MGI Sequence Detail 5118 C57BL/6J ±  kb
    transcript NM_028317 RefSeq | MGI Sequence Detail 4884 C57BL/6  
    polypeptide Q80YR3 UniProt | EBI | MGI Sequence Detail 822 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • Protein Ontology
      PR:000030279 SKI/DACH domain-containing protein 1
      (term hierarchy)
    • InterPro Domains
      IPR027971 Elongin BC and Polycomb repressive complex 2-associated protein EPOP
      IPR052119 Elongin BC-PRC2 Interaction & Viral Restriction
      IPR009061 Putative DNA-binding domain superfamily
      IPR037000 Ski-like, DNA-binding domain superfamily
      IPR003380 SKI/SNO/DAC domain
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:1917872, MGI:2139426
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 2
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory