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Veph1 Gene Detail
Summary
  • Symbol
    Veph1
  • Name
    ventricular zone expressed PH domain-containing 1
  • Synonyms
    2810471M23Rik, Veph
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920039
    NCBI Gene: 72789
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:65960979-66204258 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 30.25 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6422 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920039
 protein coding gene Chr3:65960979-66204370 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027275
 protein coding gene Chr3:65193890-65435015 (-)
A/J MGP_AJ_G0027236
 protein coding gene Chr3:63305600-63528717 (-)
AKR/J MGP_AKRJ_G0027205
 protein coding gene Chr3:64593809-64852737 (-)
BALB/cJ MGP_BALBcJ_G0027248
 protein coding gene Chr3:63121433-63356068 (-)
C3H/HeJ MGP_C3HHeJ_G0026992
 protein coding gene Chr3:64882645-65121900 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027694
 protein coding gene Chr3:67640751-67883314 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025047
 protein coding gene Chr3:59685159-59901215 (-)
CAST/EiJ MGP_CASTEiJ_G0026439
 protein coding gene Chr3:64862619-65090018 (-)
CBA/J MGP_CBAJ_G0026967
 protein coding gene Chr3:69746296-70000216 (-)
DBA/2J MGP_DBA2J_G0027103
 protein coding gene Chr3:62798989-63034908 (-)
FVB/NJ MGP_FVBNJ_G0027071
 protein coding gene Chr3:61454064-61682976 (-)
LP/J MGP_LPJ_G0027211
 protein coding gene Chr3:66114730-66357725 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027089
 protein coding gene Chr3:74336681-74585479 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027752
 protein coding gene Chr3:64502533-64749420 (-)
PWK/PhJ MGP_PWKPhJ_G0026173
 protein coding gene Chr3:62558025-62791684 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025989
 protein coding gene Chr3:63696826-63932707 (-)
WSB/EiJ MGP_WSBEiJ_G0026517
 protein coding gene Chr3:64645438-64885689 (-)



Homology
more
  • Human Ortholog
    VEPH1, ventricular zone expressed PH domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VEPH1, ventricular zone expressed PH domain containing 1
  • Synonyms
    MELT, VEPH
  • Links
    NCBI Gene ID: 79674
    neXtProt AC: NX_Q14D04
    UniProt: Q14D04

  • Chr Location
    3q25.31-q25.32; chr3:157259742-157533619 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Mice homozygous for a disruption in this gene appear normal.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    753
  • Tissues
    37
  • cDNA Data
    12
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027831 Ensembl Gene Model | MGI Sequence Detail 243280 C57BL/6J ±  kb
transcript ENSMUST00000029419 Ensembl | MGI Sequence Detail 6431 Not Applicable  
polypeptide ENSMUSP00000029419 Ensembl | MGI Sequence Detail 833 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    Genomic 1
    cDNA 12
    Primer pair 3

    Microarray probesets 2
References
more
  • Summaries
    All 30
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:303701 He L, et al., PRDM16 regulates a temporal transcriptional program to promote progression of cortical neural progenitors. Development. 2021 Mar 17;148(6):dev194670
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory