Kantr MGI Mouse Gene Detail - MGI:1920247 - Kdm5c adjacent non-coding transcript

Symbol

Kantr
Name

Kdm5c adjacent non-coding transcript
Synonyms

2810454L23Rik, 2900056M20Rik, Spasm

Feature Type

lncRNA gene

BioType Conflict
IDs

MGI:1920247
NCBI Gene: 72997
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

ChrX:151077824-151110491 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome X, 68.46 cM
Mapping Data

1 experiment

SNPs within 2kb

657 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920247	lncRNA gene	ChrX:151077820-151110491 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007571	lincRNA gene	ChrX:150063146-150096065 (-)
A/J	MGP_AJ_G0007569	lincRNA gene	ChrX:149251595-149277575 (-)
AKR/J	MGP_AKRJ_G0007540	lincRNA gene	ChrX:154093172-154120749 (-)
BALB/cJ	MGP_BALBcJ_G0007544	lincRNA gene	ChrX:147439346-147466353 (-)
C3H/HeJ	MGP_C3HHeJ_G0007491	lincRNA gene	ChrX:150279855-150306223 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007717	lincRNA gene	ChrX:154336976-154366947 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006892	lincRNA gene	ChrX:140938772-140968074 (-)
CAST/EiJ	MGP_CASTEiJ_G0007393	lincRNA gene	ChrX:129698117-129726305 (-)
CBA/J	MGP_CBAJ_G0007472	lincRNA gene	ChrX:158877380-158909279 (-)
DBA/2J	MGP_DBA2J_G0007497	lincRNA gene	ChrX:148314480-148341911 (-)
FVB/NJ	MGP_FVBNJ_G0007513	lincRNA gene	ChrX:147450279-147478113 (-)
LP/J	MGP_LPJ_G0007577	lincRNA gene	ChrX:151168629-151195211 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007492	lincRNA gene	ChrX:167032344-167059145 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007720	lincRNA gene	ChrX:149593080-149621609 (-)
PWK/PhJ	MGP_PWKPhJ_G0007330	lincRNA gene	ChrX:126638273-126664083 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007234	lincRNA gene	ChrX:130156791-130182387 (-)
WSB/EiJ	MGP_WSBEiJ_G0007454	lincRNA gene	ChrX:147642339-147672003 (-)

Human Ortholog

KANTR, KANTR integral membrane protein

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

KANTR, KANTR integral membrane protein
Synonyms

LINC01155, Spasm
Links

HGNC:49510

NCBI Gene ID: 102723508
Chr Location

chrX:53094142-53170914 (+) GRCh38

MGI Vertebrate Homology

Kantr stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: KANTR
Gene Tree

Kantr

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
8 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

23
Endonuclease-mediated

1
Gene trapped

21
Targeted

1
Find Mice (IMSR)

25 strains or lines available

Mice homozygous for a null mutation exhibit tremors and a propensity to develop spastic movements when handled.

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All GO Annotations

2
GO References

2

Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

712
Tissues

5
cDNA Data

30
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

39
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000087403 (Evidence)
NCBI Gene

72997

			Length	Strain/Species	Flank
genomic	ENSMUSG00000087403	Ensembl Gene Model \| MGI Sequence Detail	32668	C57BL/6J	± kb
transcript	ENSMUST00000195280	Ensembl \| MGI Sequence Detail	4212	Not Applicable
polypeptide	ENSMUSP00000151626	Ensembl \| MGI Sequence Detail	76	Not Applicable

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UniProt

1 Sequence

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All nucleic 30

cDNA 30

Microarray probesets 3

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MGI:1920053

Summaries

All 21

Developmental Gene Expression 2

Gene Ontology 2

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:233815 Lai KM, et al., Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. PLoS One. 2015;10(4):e0125522

TSS for Kantr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164399	ChrX:151110426-151110487 (-)	34 bp
Tssr164398	ChrX:151078473-151078475 (-)	32,017 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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