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3110082I17Rik Gene Detail
Summary
  • Symbol
    3110082I17Rik
  • Name
    RIKEN cDNA 3110082I17 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920462
    NCBI Gene: 73212
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:139345494-139446282 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 78.45 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2763 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920462
 protein coding gene Chr5:139345494-139446291 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030282
 protein coding gene Chr5:144330838-144443545 (-)
A/J MGP_AJ_G0030251
 protein coding gene Chr5:138214417-138323114 (-)
AKR/J MGP_AKRJ_G0030183
 protein coding gene Chr5:142519853-142631792 (-)
BALB/cJ MGP_BALBcJ_G0030268
 protein coding gene Chr5:139463639-139565209 (-)
C3H/HeJ MGP_C3HHeJ_G0029979
 protein coding gene Chr5:143299302-143406509 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030713
 protein coding gene Chr5:149654057-149771672 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027931
 protein coding gene Chr5:132078960-132181060 (-)
CAST/EiJ MGP_CASTEiJ_G0029384
 protein coding gene Chr5:142709896-142818716 (-)
CBA/J MGP_CBAJ_G0029949
 protein coding gene Chr5:155820708-155944425 (-)
DBA/2J MGP_DBA2J_G0030099
 protein coding gene Chr5:138027754-138130014 (-)
FVB/NJ MGP_FVBNJ_G0030054
 protein coding gene Chr5:137133606-137243620 (-)
LP/J MGP_LPJ_G0030185
 protein coding gene Chr5:144945418-145052199 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030085
 protein coding gene Chr5:158495174-158600698 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030753
 protein coding gene Chr5:142335280-142444080 (-)
PWK/PhJ MGP_PWKPhJ_G0029099
 protein coding gene Chr5:137027938-137137070 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028935
 protein coding gene Chr5:140024078-140128885 (-)
WSB/EiJ MGP_WSBEiJ_G0029458
 protein coding gene Chr5:143102819-143210727 (-)



Homology
more
  • Human Ortholog
    C7orf50, chromosome 7 open reading frame 50
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C7orf50, chromosome 7 open reading frame 50
  • Synonyms
    Cholesin, YCR016W
  • Links
    NCBI Gene ID: 84310
    neXtProt AC: NX_Q9BRJ6
    UniProt: Q9BRJ6

  • Chr Location
    7p22.3; chr7:977964-1138260 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    731
  • Tissues
    17
  • cDNA Data
    26
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000053553 Ensembl Gene Model | MGI Sequence Detail 100789 C57BL/6J ±  kb
transcript ENSMUST00000066052 Ensembl | MGI Sequence Detail 1429 Not Applicable  
polypeptide ENSMUSP00000069230 Ensembl | MGI Sequence Detail 195 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 26
    cDNA 26

    Microarray probesets 4
Other
Accession IDs
less
MGI:2141188
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:346717 Hu X, et al., A gut-derived hormone regulates cholesterol metabolism. Cell. 2024 Mar 28;187(7):1685-1700.e18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory