1700047L14Rik Gene Detail

Summary

• Symbol
  1700047L14Rik
• Name
  RIKEN cDNA 1700047L14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920545
  NCBI Gene: 73295
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:108911708-108916780 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920545	lncRNA gene	Chr5:108911708-108916784 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004133	antisense lncRNA gene	Chr5:110899945-110904245 (+)
A/J	MGP_AJ_G0004113	antisense lncRNA gene	Chr5:106632507-106637705 (+)
AKR/J	MGP_AKRJ_G0004093	antisense lncRNA gene	Chr5:110071649-110077888 (+)
BALB/cJ	MGP_BALBcJ_G0004099	antisense lncRNA gene	Chr5:107772050-107777321 (+)
C3H/HeJ	MGP_C3HHeJ_G0004047	antisense lncRNA gene	Chr5:110571213-110580436 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004248	antisense lncRNA gene	Chr5:115437908-115442049 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003725	antisense lncRNA gene	Chr5:101641399-101645399 (+)
CAST/EiJ	MGP_CASTEiJ_G0004010	antisense lncRNA gene	Chr5:109459943-109464215 (+)
CBA/J	MGP_CBAJ_G0004041	antisense lncRNA gene	Chr5:119329640-119337171 (+)
DBA/2J	MGP_DBA2J_G0004056	antisense lncRNA gene	Chr5:106759169-106763344 (+)
FVB/NJ	MGP_FVBNJ_G0004074	antisense lncRNA gene	Chr5:105486839-105491233 (+)
LP/J	MGP_LPJ_G0004135	antisense lncRNA gene	Chr5:111495033-111500471 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004063	antisense lncRNA gene	Chr5:124208575-124214020 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004244	antisense lncRNA gene	Chr5:109612504-109616648 (+)
PWK/PhJ	MGP_PWKPhJ_G0003963	antisense lncRNA gene	Chr5:105582919-105587644 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003907	antisense lncRNA gene	Chr5:107155098-107159108 (+)
WSB/EiJ	MGP_WSBEiJ_G0004045	antisense lncRNA gene	Chr5:109951709-109957113 (+)

Homology

• Gene Tree
  1700047L14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700047L14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101762 (Evidence)
• NCBI Gene
  73295

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101762	Ensembl Gene Model | MGI Sequence Detail	5073	C57BL/6J
transcript	ENSMUST00000189659	Ensembl | MGI Sequence Detail	511	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700047L14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47855	Chr5:108910425-108910430 (+)	-1,280 bp