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1700046C09Rik Gene Detail
Summary
  • Symbol
    1700046C09Rik
  • Name
    RIKEN cDNA 1700046C09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920557
    NCBI Gene: 73307
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:14510355-14549225 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 8.34 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1536 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920557
 lncRNA gene Chr11:14510336-14549225 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005171
 lincRNA gene Chr11:11892171-11930000 (-)
A/J MGP_AJ_G0005155
 lincRNA gene Chr11:11473271-11511324 (-)
AKR/J MGP_AKRJ_G0005133
 lincRNA gene Chr11:11931882-11969007 (-)
BALB/cJ MGP_BALBcJ_G0005135
 lincRNA gene Chr11:11552497-11589550 (-)
C3H/HeJ MGP_C3HHeJ_G0005084
 lincRNA gene Chr11:11866736-11905751 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005286
 lincRNA gene Chr11:12385406-12428001 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005031
 lincRNA gene Chr11:11848215-11891542 (-)
CBA/J MGP_CBAJ_G0005074
 lincRNA gene Chr11:13096135-13138429 (-)
DBA/2J MGP_DBA2J_G0005091
 lincRNA gene Chr11:11416546-11456008 (-)
FVB/NJ MGP_FVBNJ_G0005116
 lincRNA gene Chr11:11264416-11302208 (-)
LP/J MGP_LPJ_G0005173
 lincRNA gene Chr11:12025545-12063293 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005099
 lincRNA gene Chr11:13219534-13278704 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005290
 lincRNA gene Chr11:11995634-12036622 (-)
PWK/PhJ MGP_PWKPhJ_G0004982
 lincRNA gene Chr11:11469997-11506887 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004907
 lincRNA gene Chr11:11833641-11874701 (-)
WSB/EiJ MGP_WSBEiJ_G0005079
 lincRNA gene Chr11:11679473-11724799 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085561 Ensembl Gene Model | MGI Sequence Detail 38871 C57BL/6J ±  kb
transcript ENSMUST00000139973 Ensembl | MGI Sequence Detail 543 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory