1700051A21Rik Gene Detail

Summary

• Symbol
  1700051A21Rik
• Name
  RIKEN cDNA 1700051A21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920616
  NCBI Gene: 73366
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr11:72157670-72159382 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 43.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920616	lncRNA gene	Chr11:72157247-72159401 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015183	unclassified non-coding RNA gene	Chr11:72884566-72886726 (+)
A/J	MGP_AJ_G0015157	unclassified non-coding RNA gene	Chr11:70160670-70162827 (+)
AKR/J	MGP_AKRJ_G0015120	unclassified non-coding RNA gene	Chr11:72297172-72299326 (+)
BALB/cJ	MGP_BALBcJ_G0015119	unclassified non-coding RNA gene	Chr11:70453980-70456134 (+)
C3H/HeJ	MGP_C3HHeJ_G0014943	unclassified non-coding RNA gene	Chr11:72255231-72257385 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015576	unclassified non-coding RNA gene	Chr11:75088515-75090669 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013319	unclassified non-coding RNA gene	Chr11:67000150-67002275 (+)
CAST/EiJ	MGP_CASTEiJ_G0014496	unclassified non-coding RNA gene	Chr11:72625451-72627605 (+)
CBA/J	MGP_CBAJ_G0014922	unclassified non-coding RNA gene	Chr11:78413287-78415441 (+)
DBA/2J	MGP_DBA2J_G0015015	unclassified non-coding RNA gene	Chr11:69808767-69810932 (+)
FVB/NJ	MGP_FVBNJ_G0015027	unclassified non-coding RNA gene	Chr11:69332862-69335016 (+)
LP/J	MGP_LPJ_G0015096	unclassified non-coding RNA gene	Chr11:73392815-73394975 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015053	unclassified non-coding RNA gene	Chr11:78983999-78986153 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015615	unclassified non-coding RNA gene	Chr11:72498074-72500231 (+)
PWK/PhJ	MGP_PWKPhJ_G0014288	unclassified non-coding RNA gene	Chr11:70421512-70423677 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014075	unclassified non-coding RNA gene	Chr11:72203765-72205892 (+)
WSB/EiJ	MGP_WSBEiJ_G0014599	unclassified non-coding RNA gene	Chr11:72235172-72237329 (+)

Homology

• Gene Tree
  1700051A21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  2 involving 1700051A21Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000086951 (Evidence)
• NCBI Gene
  73366

Representative Sequences			Length	Strain/Species
genomic	73366	NCBI Gene Model | MGI Sequence Detail	1713	C57BL/6J
transcript	NR_045922	RefSeq | MGI Sequence Detail	1358	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 5

References

• Summaries
  All 22

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 1700051A21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102824	Chr11:72157235-72157249 (+)	-428 bp
Tssr102825	Chr11:72157252-72157280 (+)	-404 bp
Tssr102826	Chr11:72157295-72157305 (+)	-370 bp
Tssr102827	Chr11:72158066-72158073 (+)	400 bp
Tssr102828	Chr11:72158077-72158093 (+)	415 bp
Tssr102829	Chr11:72158094-72158099 (+)	427 bp
Tssr102830	Chr11:72158100-72158126 (+)	443 bp
Tssr102831	Chr11:72158128-72158146 (+)	467 bp