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1700048O20Rik Gene Detail
Summary
  • Symbol
    1700048O20Rik
  • Name
    RIKEN cDNA 1700048O20 gene
  • Synonyms
    1700022O21Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920637
    NCBI Gene: 69430
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121766341-121776082 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    336 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920637
 lncRNA gene Chr9:121766289-121776082 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035455
 protein coding gene Chr9:124904337-124913220 (+)
A/J MGP_AJ_G0035436
 protein coding gene Chr9:120148035-120156918 (+)
AKR/J MGP_AKRJ_G0035369
 protein coding gene Chr9:123355556-123364436 (+)
BALB/cJ MGP_BALBcJ_G0035432
 protein coding gene Chr9:120058414-120067269 (+)
C3H/HeJ MGP_C3HHeJ_G0035139
 protein coding gene Chr9:123807771-123816455 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035955
 protein coding gene Chr9:128327746-128338645 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032837
 protein coding gene Chr9:117302351-117311978 (+)
CAST/EiJ MGP_CASTEiJ_G0034444
 protein coding gene Chr9:123856924-123866685 (+)
CBA/J MGP_CBAJ_G0035107
 protein coding gene Chr9:133034072-133046024 (+)
DBA/2J MGP_DBA2J_G0035266
 protein coding gene Chr9:119589331-119598414 (+)
FVB/NJ MGP_FVBNJ_G0035213
 protein coding gene Chr9:118505649-118516238 (+)
LP/J MGP_LPJ_G0035345
 protein coding gene Chr9:125240631-125254100 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035254
 protein coding gene Chr9:133939527-133948391 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035974
 protein coding gene Chr9:123791101-123800120 (+)
PWK/PhJ MGP_PWKPhJ_G0034148
 protein coding gene Chr9:120045786-120054780 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033985
 protein coding gene Chr9:123914099-123922776 (+)
WSB/EiJ MGP_WSBEiJ_G0034564
 protein coding gene Chr9:123648731-123657417 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69430 NCBI Gene Model | MGI Sequence Detail 9742 C57BL/6J ±  kb
transcript NR_033553 RefSeq | MGI Sequence Detail 1908 C57BL/6  
polypeptide Q3V488 UniProt | EBI | MGI Sequence Detail 91 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036051 KRAB domain superfamily
    IPR001909 Krueppel-associated box
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
Other
Accession IDs
less
MGI:1916680
References
more
  • Summaries
    All 13
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory