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1700049E22Rik Gene Detail
Summary
  • Symbol
    1700049E22Rik
  • Name
    RIKEN cDNA 1700049E22 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920645
    NCBI Gene: 73395
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:100504361-100510387 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    331 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920645
 lncRNA gene Chr6:100504338-100510653 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007032
 lincRNA gene Chr6:102569904-102575831 (+)
A/J MGP_AJ_G0007028
 lincRNA gene Chr6:98636180-98642253 (+)
AKR/J MGP_AKRJ_G0006997
 lincRNA gene Chr6:101345865-101351836 (+)
BALB/cJ MGP_BALBcJ_G0007003
 lincRNA gene Chr6:98607830-98614147 (+)
C3H/HeJ MGP_C3HHeJ_G0006920
 lincRNA gene Chr6:83070756-83077653 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007169
 lincRNA gene Chr6:105148389-105156225 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006400
 lincRNA gene Chr6:96457563-96463488 (+)
CAST/EiJ MGP_CASTEiJ_G0006859
 lincRNA gene Chr6:101581415-101588984 (+)
CBA/J MGP_CBAJ_G0006928
 lincRNA gene Chr6:109174032-109183312 (+)
DBA/2J MGP_DBA2J_G0006950
 lincRNA gene Chr6:97762338-97768300 (+)
FVB/NJ MGP_FVBNJ_G0006974
 lincRNA gene Chr6:96942301-96948244 (+)
LP/J MGP_LPJ_G0007035
 lincRNA gene Chr6:102614483-102620406 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006954
 lincRNA gene Chr6:112942457-112948375 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007174
 lincRNA gene Chr6:101258032-101265426 (+)
PWK/PhJ MGP_PWKPhJ_G0006799
 lincRNA gene Chr6:96793857-96800263 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006709
 lincRNA gene Chr6:100146711-100153577 (+)
WSB/EiJ MGP_WSBEiJ_G0006917
 lincRNA gene Chr6:101772815-101780324 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73395 NCBI Gene Model | MGI Sequence Detail 6027 C57BL/6J ±  kb
transcript NR_040525 RefSeq | MGI Sequence Detail 507 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 11
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory