Pom121l12 Gene Detail

Summary

• Symbol
  Pom121l12
• Name
  POM121 membrane glycoprotein-like 12
• Synonyms
  1700054H16Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1920677
  NCBI Gene: 432536
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:14549276-14550314 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 8.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920677	protein coding gene	Chr11:14549240-14550316 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010591	pseudogene	Chr11:11930089-11930637 (+)
A/J	MGP_AJ_G0010583	pseudogene	Chr11:11511413-11511961 (+)
AKR/J	MGP_AKRJ_G0010544	pseudogene	Chr11:11969096-11969644 (+)
BALB/cJ	MGP_BALBcJ_G0010559	pseudogene	Chr11:11589639-11590187 (+)
C3H/HeJ	MGP_C3HHeJ_G0010480	pseudogene	Chr11:11905840-11906388 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010830	pseudogene	Chr11:12428090-12428638 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009494	pseudogene	Chr11:10932865-10933413 (+)
CAST/EiJ	MGP_CASTEiJ_G0010304	pseudogene	Chr11:11891627-11892175 (+)
CBA/J	MGP_CBAJ_G0010452	pseudogene	Chr11:13138518-13139066 (+)
DBA/2J	MGP_DBA2J_G0010483	pseudogene	Chr11:11456097-11456645 (+)
FVB/NJ	MGP_FVBNJ_G0010500	pseudogene	Chr11:11302297-11302845 (+)
LP/J	MGP_LPJ_G0010572	pseudogene	Chr11:12063382-12063930 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010476	pseudogene	Chr11:13278793-13279341 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010807	pseudogene	Chr11:12036711-12037259 (+)
PWK/PhJ	MGP_PWKPhJ_G0010204	pseudogene	Chr11:11506972-11507520 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010017	pseudogene	Chr11:11874786-11875334 (+)
WSB/EiJ	MGP_WSBEiJ_G0010362	pseudogene	Chr11:11724888-11725436 (+)

Homology

• Human Ortholog
  POM121L12, POM121 transmembrane nucleoporin like 12

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  POM121L12, POM121 transmembrane nucleoporin like 12
  
• Links
  HGNC:25369

  NCBI Gene ID: 285877

  neXtProt AC: NX_Q8N7R1

  UniProt: Q8N7R1

  
  
• Chr Location
  7p12.1; chr7:53035633-53036925 (+)  GRCh38

---

• MGI Vertebrate Homology
  Pom121l12 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: POM121L12
• Gene Tree
  Pom121l12
  

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS83783.1

• Ensembl
  ENSMUSG00000084135 (Evidence)
• NCBI Gene
  432536

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084135	Ensembl Gene Model | MGI Sequence Detail	1039	C57BL/6J
transcript	ENSMUST00000117584	Ensembl | MGI Sequence Detail	1039	Not Applicable
polypeptide	ENSMUSP00000147960	Ensembl | MGI Sequence Detail	278	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Pom121l12:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100399	Chr11:14549240-14549243 (+)	-34 bp
Tssr100400	Chr11:14549252-14549296 (+)	-2 bp