1700100L14Rik Gene Detail

Summary

• Symbol
  1700100L14Rik
• Name
  RIKEN cDNA 1700100L14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920834
  NCBI Gene: 73584
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:70721360-70724223 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920834	lncRNA gene	Chr13:70721360-70724229 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003198	antisense lncRNA gene	Chr13:70879984-70884175 (+)
A/J	MGP_AJ_G0003174	antisense lncRNA gene	Chr13:68370480-68373305 (+)
AKR/J	MGP_AKRJ_G0003156	antisense lncRNA gene	Chr13:70575086-70579480 (+)
BALB/cJ	MGP_BALBcJ_G0003161	antisense lncRNA gene	Chr13:68900411-68903469 (+)
C3H/HeJ	MGP_C3HHeJ_G0003117	antisense lncRNA gene	Chr13:70257443-70260256 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003304	antisense lncRNA gene	Chr13:73316097-73321220 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002831	antisense lncRNA gene	Chr13:65275999-65278807 (+)
CAST/EiJ	MGP_CASTEiJ_G0003084	antisense lncRNA gene	Chr13:69263879-69268029 (+)
CBA/J	MGP_CBAJ_G0003114	antisense lncRNA gene	Chr13:76129333-76134059 (+)
DBA/2J	MGP_DBA2J_G0003119	antisense lncRNA gene	Chr13:68240239-68243614 (+)
FVB/NJ	MGP_FVBNJ_G0003137	antisense lncRNA gene	Chr13:67255947-67259031 (+)
LP/J	MGP_LPJ_G0003195	antisense lncRNA gene	Chr13:71155377-71158208 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003128	antisense lncRNA gene	Chr13:74559564-74563999 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003305	antisense lncRNA gene	Chr13:69855925-69860047 (+)
PWK/PhJ	MGP_PWKPhJ_G0003041	antisense lncRNA gene	Chr13:66945364-66948237 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002988	antisense lncRNA gene	Chr13:66354526-66359160 (+)
WSB/EiJ	MGP_WSBEiJ_G0003117	antisense lncRNA gene	Chr13:70364110-70366958 (+)

Homology

• Gene Tree
  1700100L14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700100L14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000101051 (Evidence)
• NCBI Gene
  73584

Representative Sequences			Length	Strain/Species
genomic	73584	NCBI Gene Model | MGI Sequence Detail	2864	C57BL/6J
transcript	NR_045934	RefSeq | MGI Sequence Detail	682	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700100L14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120295	Chr13:70721349-70721362 (+)	-4 bp
Tssr120296	Chr13:70722550-70722591 (+)	1,211 bp
Tssr120297	Chr13:70722596-70722614 (+)	1,245 bp
Tssr120298	Chr13:70722623-70722634 (+)	1,269 bp