2210408F21Rik MGI Mouse Gene Detail - MGI:1920902

Symbol

2210408F21Rik
Name

RIKEN cDNA 2210408F21 gene

Feature Type

lncRNA gene
IDs

MGI:1920902
NCBI Gene: 73652
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr6:31197286-31314330 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 12.56 cM
Mapping Data

1 experiment

SNPs within 2kb

2999 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920902	lncRNA gene	Chr6:31196852-31361711 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015626	unclassified non-coding RNA gene	Chr6:29126695-29249367 (+)
A/J	MGP_AJ_G0015602	unclassified non-coding RNA gene	Chr6:27900988-28018972 (+)
AKR/J	MGP_AKRJ_G0015565	unclassified non-coding RNA gene	Chr6:28830427-28949857 (+)
BALB/cJ	MGP_BALBcJ_G0015564	unclassified non-coding RNA gene	Chr6:28023728-28141547 (+)
C3H/HeJ	MGP_C3HHeJ_G0015386	unclassified non-coding RNA gene	Chr6:28843365-28964810 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016017	unclassified non-coding RNA gene	Chr6:29953103-30077073 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013751	unclassified non-coding RNA gene	Chr6:26062285-26182847 (+)
CAST/EiJ	MGP_CASTEiJ_G0014942	unclassified non-coding RNA gene	Chr6:28618933-28743103 (+)
CBA/J	MGP_CBAJ_G0015367	unclassified non-coding RNA gene	Chr6:31125683-31246092 (+)
DBA/2J	MGP_DBA2J_G0015461	unclassified non-coding RNA gene	Chr6:27798943-27922772 (+)
FVB/NJ	MGP_FVBNJ_G0015468	unclassified non-coding RNA gene	Chr6:27594101-27713670 (+)
LP/J	MGP_LPJ_G0015542	unclassified non-coding RNA gene	Chr6:29319316-29439269 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015491	unclassified non-coding RNA gene	Chr6:33517318-33639646 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016060	unclassified non-coding RNA gene	Chr6:28725813-28850096 (+)
PWK/PhJ	MGP_PWKPhJ_G0014726	unclassified non-coding RNA gene	Chr6:27376153-27502679 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014515	unclassified non-coding RNA gene	Chr6:28410963-28535556 (+)
WSB/EiJ	MGP_WSBEiJ_G0015046	unclassified non-coding RNA gene	Chr6:28648529-28772602 (+)

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Gene Tree

2210408F21Rik

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Phenotype Summary

3 phenotype references

All Mutations and Alleles

2
Endonuclease-mediated

1
Gene trapped

1
Find Mice (IMSR)

2 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

20

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

333
RefSeq

6

Ensembl

ENSMUSG00000087380 (Evidence)
NCBI Gene

73652

Representative Sequences				Length	Strain/Species	Flank
	genomic	73652	NCBI Gene Model \| MGI Sequence Detail	117045	C57BL/6J	± kb
	transcript	NR_040257	RefSeq \| MGI Sequence Detail	1013	C57BL/6

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All nucleic 20

cDNA 20

Summaries

All 12

Phenotypes 3
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345102 Zhu J, et al., The 2210408F21Rik/miR-1968-5p/Hras axis regulates synapse-related proteins in a mouse model of depressive-like behaviors through a ceRNA mechanism. Behav Brain Res. 2023 Jun 5;447:114440

TSS for 2210408F21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55458	Chr6:31197278-31197299 (+)	3 bp
Tssr55459	Chr6:31197335-31197364 (+)	64 bp
Tssr55460	Chr6:31197367-31197399 (+)	97 bp
Tssr55461	Chr6:31198735-31198781 (+)	1,472 bp
Tssr55462	Chr6:31214198-31214218 (+)	16,922 bp
Tssr55464	Chr6:31291046-31291074 (+)	93,774 bp
Tssr55465	Chr6:31304198-31304201 (+)	106,914 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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