Lce1c Gene Detail

Summary

• Symbol
  Lce1c
• Name
  late cornified envelope 1C
• Synonyms
  1110014K05Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1920969
  NCBI Gene: 73719
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:92586554-92588225 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM, cytoband F2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920969	protein coding gene	Chr3:92586554-92588225 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027509	protein coding gene	Chr3:93137380-93139051 (+)
A/J	MGP_AJ_G0027476	protein coding gene	Chr3:90207055-90208838 (+)
AKR/J	MGP_AKRJ_G0027441	protein coding gene	Chr3:92321826-92323497 (+)
BALB/cJ	MGP_BALBcJ_G0027484	protein coding gene	Chr3:90018462-90020132 (+)
C3H/HeJ	MGP_C3HHeJ_G0027224	protein coding gene	Chr3:92543871-92545602 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027928	protein coding gene	Chr3:96680917-96683824 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025277	protein coding gene	Chr3:86835951-86837624 (+)
CAST/EiJ	MGP_CASTEiJ_G0026671	protein coding gene	Chr3:91965123-91966751 (+)
CBA/J	MGP_CBAJ_G0027198	protein coding gene	Chr3:100003445-100007241 (+)
DBA/2J	MGP_DBA2J_G0027336	protein coding gene	Chr3:89527704-89529375 (+)
FVB/NJ	MGP_FVBNJ_G0027304	protein coding gene	Chr3:87695777-87697418 (+)
LP/J	MGP_LPJ_G0027444	protein coding gene	Chr3:94356118-94357942 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027329	protein coding gene	Chr3:106287070-106289731 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027987	protein coding gene	Chr3:92050608-92054404 (+)
PWK/PhJ	MGP_PWKPhJ_G0026404	protein coding gene	Chr3:89408472-89410142 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026222	protein coding gene	Chr3:90380773-90382408 (+)
WSB/EiJ	MGP_WSBEiJ_G0026754	protein coding gene	Chr3:92435944-92438666 (+)

Homology

• MGI Vertebrate Homology
  Lce1c stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Lce1c
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Lce1c
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS38514.1

• Ensembl
  ENSMUSG00000042092 (Evidence)
• NCBI Gene
  73719

Representative Sequences			Length	Strain/Species
genomic	73719	NCBI Gene Model | MGI Sequence Detail	1672	C57BL/6J
transcript	NM_028622	RefSeq | MGI Sequence Detail	724	C57BL/6
polypeptide	NP_082898	RefSeq | MGI Sequence Detail	147	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Lce1c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30307	Chr3:92586552-92586554 (+)	-1 bp