4930406D18Rik Gene Detail

Summary

• Symbol
  4930406D18Rik
• Name
  RIKEN cDNA 4930406D18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921056
  NCBI Gene: 73806
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:100333721-100345070 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 43.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921056	lncRNA gene	Chr3:100333721-100345070 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015513	unclassified non-coding RNA gene	Chr3:101542841-101554340 (+)
A/J	MGP_AJ_G0015490	unclassified non-coding RNA gene	Chr3:98333502-98345010 (+)
AKR/J	MGP_AKRJ_G0015454	unclassified non-coding RNA gene	Chr3:100717546-100728750 (+)
BALB/cJ	MGP_BALBcJ_G0015452	unclassified non-coding RNA gene	Chr3:98094810-98106160 (+)
C3H/HeJ	MGP_C3HHeJ_G0015275	unclassified non-coding RNA gene	Chr3:101037720-101049542 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015906	unclassified non-coding RNA gene	Chr3:105269770-105282189 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013642	unclassified non-coding RNA gene	Chr3:94547502-94558130 (+)
CAST/EiJ	MGP_CASTEiJ_G0014829	unclassified non-coding RNA gene	Chr3:100145740-100157125 (+)
CBA/J	MGP_CBAJ_G0015256	unclassified non-coding RNA gene	Chr3:108875696-108886512 (+)
DBA/2J	MGP_DBA2J_G0015350	unclassified non-coding RNA gene	Chr3:97574703-97585102 (+)
FVB/NJ	MGP_FVBNJ_G0015357	unclassified non-coding RNA gene	Chr3:95516264-95527218 (+)
LP/J	MGP_LPJ_G0015429	unclassified non-coding RNA gene	Chr3:102895226-102906606 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015381	unclassified non-coding RNA gene	Chr3:115128842-115141013 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015947	unclassified non-coding RNA gene	Chr3:100224951-100239166 (+)
PWK/PhJ	MGP_PWKPhJ_G0014616	unclassified non-coding RNA gene	Chr3:97324446-97336021 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014404	unclassified non-coding RNA gene	Chr3:98333455-98343737 (+)
WSB/EiJ	MGP_WSBEiJ_G0014935	unclassified non-coding RNA gene	Chr3:100792480-100802934 (+)

Homology

• Gene Tree
  4930406D18Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930406D18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000086923 (Evidence)
• NCBI Gene
  73806

Representative Sequences			Length	Strain/Species
genomic	73806	NCBI Gene Model | MGI Sequence Detail	11350	C57BL/6J
transcript	NR_040543	RefSeq | MGI Sequence Detail	691	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4930406D18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30875	Chr3:100333749-100333773 (+)	40 bp