4930417O13Rik MGI Mouse Gene Detail - MGI:1921120

Symbol

4930417O13Rik
Name

RIKEN cDNA 4930417O13 gene

Feature Type

lncRNA gene
IDs

MGI:1921120
NCBI Gene: 73870
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr6:125242488-125250740 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 59.32 cM
Mapping Data

1 experiment

SNPs within 2kb

345 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921120	lncRNA gene	Chr6:125242439-125267691 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015649	unclassified non-coding RNA gene	Chr6:128606360-128629194 (+)
A/J	MGP_AJ_G0015625	unclassified non-coding RNA gene	Chr6:123753947-123775821 (+)
AKR/J	MGP_AKRJ_G0015588	unclassified non-coding RNA gene	Chr6:127130175-127151651 (+)
BALB/cJ	MGP_BALBcJ_G0015587	unclassified non-coding RNA gene	Chr6:123347335-123370855 (+)
C3H/HeJ	MGP_C3HHeJ_G0015409	unclassified non-coding RNA gene	Chr6:127199503-127224997 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016040	unclassified non-coding RNA gene	Chr6:131996051-132019070 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013773	unclassified non-coding RNA gene	Chr6:120961648-120986908 (+)
CAST/EiJ	MGP_CASTEiJ_G0014965	unclassified non-coding RNA gene	Chr6:127414502-127436787 (+)
CBA/J	MGP_CBAJ_G0015390	unclassified non-coding RNA gene	Chr6:137051152-137075589 (+)
DBA/2J	MGP_DBA2J_G0015484	unclassified non-coding RNA gene	Chr6:122680627-122702428 (+)
FVB/NJ	MGP_FVBNJ_G0015491	unclassified non-coding RNA gene	Chr6:121595348-121617314 (+)
LP/J	MGP_LPJ_G0015565	unclassified non-coding RNA gene	Chr6:128770423-128793059 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015514	unclassified non-coding RNA gene	Chr6:141086793-141112430 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016082	unclassified non-coding RNA gene	Chr6:127031239-127057257 (+)
PWK/PhJ	MGP_PWKPhJ_G0014748	unclassified non-coding RNA gene	Chr6:120928387-120950240 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014536	unclassified non-coding RNA gene	Chr6:125112003-125133461 (+)
WSB/EiJ	MGP_WSBEiJ_G0015069	unclassified non-coding RNA gene	Chr6:127404691-127429089 (+)

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Gene Tree

4930417O13Rik

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

9

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

32
RefSeq

1

Ensembl

ENSMUSG00000108129 (Evidence)
NCBI Gene

73870

Representative Sequences				Length	Strain/Species	Flank
	genomic	73870	NCBI Gene Model \| MGI Sequence Detail	8253	C57BL/6J	± kb
	transcript	NR_015527	RefSeq \| MGI Sequence Detail	1093	C57BL/6

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All nucleic 9

cDNA 9

Summaries

All 9
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930417O13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58943	Chr6:125242433-125242444 (+)	-49 bp
Tssr58944	Chr6:125242476-125242493 (+)	-3 bp
Tssr58945	Chr6:125242501-125242508 (+)	17 bp
Tssr58946	Chr6:125242521-125242548 (+)	47 bp
Tssr58947	Chr6:125242550-125242561 (+)	68 bp
Tssr58948	Chr6:125243203-125243215 (+)	721 bp
Tssr58949	Chr6:125243226-125243246 (+)	748 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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