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Slc35a5 Gene Detail
Summary
  • Symbol
    Slc35a5
  • Name
    solute carrier family 35, member A5
  • Synonyms
    1010001J06Rik, D16Ertd450e, D730043G07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921352
    NCBI Gene: 74102
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:44959936-44979036 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 29.44 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    509 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921352
 protein coding gene Chr16:44959936-44979069 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022848
 protein coding gene Chr16:43915652-43935000 (-)
A/J MGP_AJ_G0022813
 protein coding gene Chr16:41937044-41956393 (-)
AKR/J MGP_AKRJ_G0022785
 protein coding gene Chr16:43317733-43337082 (-)
BALB/cJ MGP_BALBcJ_G0022814
 protein coding gene Chr16:41940891-41960240 (-)
C3H/HeJ MGP_C3HHeJ_G0022578
 protein coding gene Chr16:43473937-43493285 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023261
 protein coding gene Chr16:44904572-44923695 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020775
 protein coding gene Chr16:42337805-42358293 (-)
CAST/EiJ MGP_CASTEiJ_G0022103
 protein coding gene Chr16:43661892-43681233 (-)
CBA/J MGP_CBAJ_G0022549
 protein coding gene Chr16:46811887-46831235 (-)
DBA/2J MGP_DBA2J_G0022681
 protein coding gene Chr16:41682968-41703037 (-)
FVB/NJ MGP_FVBNJ_G0022656
 protein coding gene Chr16:41603460-41622806 (-)
LP/J MGP_LPJ_G0022749
 protein coding gene Chr16:43652999-43672347 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022675
 protein coding gene Chr16:46220262-46240671 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023276
 protein coding gene Chr16:43342489-43361837 (-)
PWK/PhJ MGP_PWKPhJ_G0021843
 protein coding gene Chr16:42048823-42068001 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021674
 protein coding gene Chr16:43256245-43275559 (-)
WSB/EiJ MGP_WSBEiJ_G0022148
 protein coding gene Chr16:43430880-43450228 (-)



Homology
more
  • Human Ortholog
    SLC35A5, solute carrier family 35 member A5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC35A5, solute carrier family 35 member A5
  • Links
    NCBI Gene ID: 55032
    neXtProt AC: NX_Q9BS91
    UniProt: Q9BS91

  • Chr Location
    3q13.2; chr3:112561320-112585579 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    15
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74102 NCBI Gene Model | MGI Sequence Detail 19101 C57BL/6J ±  kb
transcript NM_028756 RefSeq | MGI Sequence Detail 4200 C57BL/6  
polypeptide Q921R7 UniProt | EBI | MGI Sequence Detail 437 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 16
    Primer pair 3

    Microarray probesets 7
Other
Accession IDs
less
MGI:1196393, MGI:2146560, MGI:2146679, MGI:2445073
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory