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Stk40 Gene Detail
Summary
  • Symbol
    Stk40
  • Name
    serine/threonine kinase 40
  • Synonyms
    2310004N11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921428
    NCBI Gene: 74178
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:125997750-126034822 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 59.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    872 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921428
 protein coding gene Chr4:125997738-126034822 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028771
 protein coding gene Chr4:127757126-127794354 (+)
A/J MGP_AJ_G0028730
 protein coding gene Chr4:122720696-122761265 (+)
AKR/J MGP_AKRJ_G0028683
 protein coding gene Chr4:126107018-126144910 (+)
BALB/cJ MGP_BALBcJ_G0028753
 protein coding gene Chr4:123306325-123346498 (+)
C3H/HeJ MGP_C3HHeJ_G0028467
 protein coding gene Chr4:126154855-126195109 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029195
 protein coding gene Chr4:132636181-132675911 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026468
 protein coding gene Chr4:115877260-115916365 (+)
CAST/EiJ MGP_CASTEiJ_G0027900
 protein coding gene Chr4:124273761-124311058 (+)
CBA/J MGP_CBAJ_G0028433
 protein coding gene Chr4:135852613-135889628 (+)
DBA/2J MGP_DBA2J_G0028582
 protein coding gene Chr4:123188948-123225920 (+)
FVB/NJ MGP_FVBNJ_G0028549
 protein coding gene Chr4:121837501-121874881 (+)
LP/J MGP_LPJ_G0028683
 protein coding gene Chr4:128044049-128081087 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028575
 protein coding gene Chr4:140882743-140919759 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029233
 protein coding gene Chr4:126453001-126490871 (+)
PWK/PhJ MGP_PWKPhJ_G0027621
 protein coding gene Chr4:119649996-119687729 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027447
 protein coding gene Chr4:122269121-122305966 (+)
WSB/EiJ MGP_WSBEiJ_G0027980
 protein coding gene Chr4:126544527-126584509 (+)



Homology
more
  • Human Ortholog
    STK40, serine/threonine kinase 40
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    STK40, serine/threonine kinase 40
  • Synonyms
    SgK495, SHIK
  • Links
    NCBI Gene ID: 83931
    neXtProt AC: NX_Q8N2I9
    UniProt: Q8N2I9

  • Chr Location
    1p34.3; chr1:36339624-36385924 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 1 allele in 1 genetic background
    2 images
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit complete neonatal lethality associated with cyanosis, atelectasis, respiratory distress and impaired lung maturation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    39
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    833
  • Tissues
    42
  • cDNA Data
    10
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000042608 Ensembl Gene Model | MGI Sequence Detail 37073 C57BL/6J ±  kb
    transcript ENSMUST00000116286 Ensembl | MGI Sequence Detail 3860 Not Applicable  
    polypeptide ENSMUSP00000111990 Ensembl | MGI Sequence Detail 449 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 11
      Primer pair 2

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:2140272
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 6
      Gene Ontology 9
      Phenotypes 17
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:328941 Ndoja A, et al., Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia. Cell. 2020 Sep 3;182(5):1156-1169.e12
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory