1700017B05Rik MGI Mouse Gene Detail - MGI:1921461

Symbol

1700017B05Rik
Name

RIKEN cDNA 1700017B05 gene
Synonyms

D9Ertd278e

Feature Type

protein coding gene
IDs

MGI:1921461
NCBI Gene: 74211
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr9:57160400-57169895 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 30.89 cM, cytoband C
Mapping Data

4 experiments

SNPs within 2kb

248 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921461	protein coding gene	Chr9:57159605-57169895 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0034863	protein coding gene	Chr9:56437289-56447613 (-)
A/J	MGP_AJ_G0034844	protein coding gene	Chr9:54622548-54632913 (-)
AKR/J	MGP_AKRJ_G0034773	protein coding gene	Chr9:55889332-55899646 (-)
BALB/cJ	MGP_BALBcJ_G0034836	protein coding gene	Chr9:54413994-54424271 (-)
C3H/HeJ	MGP_C3HHeJ_G0034546	protein coding gene	Chr9:56360113-56374519 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0035355	protein coding gene	Chr9:58028893-58039206 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032266	protein coding gene	Chr9:53948584-53958800 (-)
CAST/EiJ	MGP_CASTEiJ_G0033867	protein coding gene	Chr9:56439701-56449969 (-)
CBA/J	MGP_CBAJ_G0034517	protein coding gene	Chr9:60059825-60070092 (-)
DBA/2J	MGP_DBA2J_G0034676	protein coding gene	Chr9:54501702-54512479 (-)
FVB/NJ	MGP_FVBNJ_G0034618	protein coding gene	Chr9:53720988-53731321 (-)
LP/J	MGP_LPJ_G0034759	protein coding gene	Chr9:56733098-56743415 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034661	protein coding gene	Chr9:61526840-61537141 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035377	protein coding gene	Chr9:55908112-55918415 (-)
PWK/PhJ	MGP_PWKPhJ_G0033572	protein coding gene	Chr9:54524827-54535269 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0033406	protein coding gene	Chr9:56188728-56199023 (-)
WSB/EiJ	MGP_WSBEiJ_G0033980	protein coding gene	Chr9:55837342-55847655 (-)

Human Ortholog

C15orf39, chromosome 15 open reading frame 39

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C15orf39, chromosome 15 open reading frame 39
Links

HGNC:24497

NCBI Gene ID: 56905

neXtProt AC: NX_Q6ZRI6

UniProt: Q6ZRI6
Chr Location

15q24.2; chr15:75195643-75212169 (+) GRCh38

MGI Vertebrate Homology

1700017B05Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C15orf39
Gene Tree

1700017B05Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

17
Endonuclease-mediated

2
Gene trapped

13
Targeted

2
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

40 strains or lines available

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All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

81

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

62
RefSeq

4
UniProt

5
CCDS

CCDS23219.1

Ensembl

ENSMUSG00000032300 (Evidence)
NCBI Gene

74211

			Length	Strain/Species	Flank
genomic	ENSMUSG00000032300	Ensembl Gene Model \| MGI Sequence Detail	9496	C57BL/6J	± kb
transcript	ENSMUST00000034846	Ensembl \| MGI Sequence Detail	4152	Not Applicable
polypeptide	ENSMUSP00000034846	Ensembl \| MGI Sequence Detail	1023	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000059883 uncharacterized protein C15orf39

(term hierarchy)
InterPro Domains

IPR037656 Family of unknown function DUF5525
GlyGen

Q3TEI4 1 site, 1 O-linked glycan (1 site)

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All nucleic 84

cDNA 83

Primer pair 1

Microarray probesets 5

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MGI:1196263, MGI:2142962

Summaries

All 34

Gene Ontology 2

Phenotypes 6
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for 1700017B05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89772	Chr9:57170044-57170080 (-)	-167 bp
Tssr89771	Chr9:57169874-57169892 (-)	12 bp
Tssr89770	Chr9:57169846-57169863 (-)	40 bp
Tssr89769	Chr9:57169260-57169264 (-)	633 bp
Tssr2885	Chr9:57169157-57169176 (-)	728 bp
Tssr89768	Chr9:57168992-57168993 (-)	902 bp
Tssr89767	Chr9:57168859-57168868 (-)	1,031 bp
Tssr89766	Chr9:57168777-57168807 (-)	1,103 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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