Kdm6bos Gene Detail

Summary

• Symbol
  Kdm6bos
• Name
  KDM1 lysine (K)-specific demethylase 6B, opposite strand
• Synonyms
  1700064E03Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921523
  NCBI Gene: 74273
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:69292339-69293526 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 42.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921523	antisense lncRNA gene	Chr11:69292339-69293526 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003003	antisense lncRNA gene	Chr11:69830100-69831288 (+)
A/J	MGP_AJ_G0002980	antisense lncRNA gene	Chr11:67203047-67204235 (+)
AKR/J	MGP_AKRJ_G0002961	antisense lncRNA gene	Chr11:69213219-69214406 (+)
BALB/cJ	MGP_BALBcJ_G0002967	antisense lncRNA gene	Chr11:67522059-67523247 (+)
C3H/HeJ	MGP_C3HHeJ_G0002923	antisense lncRNA gene	Chr11:69231562-69232750 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003109	antisense lncRNA gene	Chr11:71944008-71945195 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002648	antisense lncRNA gene	Chr11:64131881-64133060 (+)
CAST/EiJ	MGP_CASTEiJ_G0002893	antisense lncRNA gene	Chr11:69467456-69468642 (+)
CBA/J	MGP_CBAJ_G0002920	antisense lncRNA gene	Chr11:75166309-75167497 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0002945	antisense lncRNA gene	Chr11:66420757-66421945 (+)
LP/J	MGP_LPJ_G0003002	antisense lncRNA gene	Chr11:70400205-70401393 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002933	antisense lncRNA gene	Chr11:75780388-75781576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003113	antisense lncRNA gene	Chr11:69463593-69464781 (+)
PWK/PhJ	MGP_PWKPhJ_G0002852	antisense lncRNA gene	Chr11:67437169-67438354 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002798	antisense lncRNA gene	Chr11:69284338-69285527 (+)
WSB/EiJ	MGP_WSBEiJ_G0002923	antisense lncRNA gene	Chr11:69143663-69144850 (+)

Homology

• Gene Tree
  Kdm6bos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Kdm6bos
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000085178 (Evidence)
• NCBI Gene
  74273

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085178	Ensembl Gene Model | MGI Sequence Detail	1188	C57BL/6J
transcript	ENSMUST00000129924	Ensembl | MGI Sequence Detail	840	Not Applicable
polypeptide	Q3V484	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14