Ube4bos3 Gene Detail

Summary

• Symbol
  Ube4bos3
• Name
  ubiquitination factor E4B, opposite strand 3
• Synonyms
  1700121F15Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921560
  NCBI Gene: 74310
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:149419096-149420354 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 79.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921560	antisense lncRNA gene	Chr4:149419096-149420369 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004002	antisense lncRNA gene	Chr4:153173071-153174337 (+)
A/J	MGP_AJ_G0003983	antisense lncRNA gene	Chr4:146781815-146783073 (+)
AKR/J	MGP_AKRJ_G0003960	antisense lncRNA gene	Chr4:150802700-150803968 (+)
BALB/cJ	MGP_BALBcJ_G0003969	antisense lncRNA gene	Chr4:147287267-147288525 (+)
C3H/HeJ	MGP_C3HHeJ_G0003916	antisense lncRNA gene	Chr4:151366183-151367451 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004118	antisense lncRNA gene	Chr4:158697989-158699247 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003599	antisense lncRNA gene	Chr4:139199007-139200266 (+)
CAST/EiJ	MGP_CASTEiJ_G0003879	antisense lncRNA gene	Chr4:148589638-148590922 (+)
CBA/J	MGP_CBAJ_G0003909	antisense lncRNA gene	Chr4:163357842-163359110 (+)
DBA/2J	MGP_DBA2J_G0003925	antisense lncRNA gene	Chr4:146895707-146896975 (+)
FVB/NJ	MGP_FVBNJ_G0003944	antisense lncRNA gene	Chr4:145998748-146000038 (+)
LP/J	MGP_LPJ_G0004005	antisense lncRNA gene	Chr4:153097973-153099239 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003932	antisense lncRNA gene	Chr4:166609638-166610906 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004112	antisense lncRNA gene	Chr4:151303972-151305230 (+)
PWK/PhJ	MGP_PWKPhJ_G0003833	antisense lncRNA gene	Chr4:142897638-142898906 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003778	antisense lncRNA gene	Chr4:145541281-145542527 (+)
WSB/EiJ	MGP_WSBEiJ_G0003915	antisense lncRNA gene	Chr4:151458189-151459451 (+)

Homology

• Gene Tree
  Ube4bos3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Ube4bos3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085286 (Evidence)
• NCBI Gene
  74310

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085286	Ensembl Gene Model | MGI Sequence Detail	1259	C57BL/6J
transcript	ENSMUST00000155845	Ensembl | MGI Sequence Detail	756	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Ube4bos3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40324	Chr4:149419107-149419136 (+)	26 bp