Cmip Gene Detail

Summary

• Symbol
  Cmip
• Name
  c-Maf inducing protein
• Synonyms
  4933407C03Rik, 5830471E12Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1921690
  NCBI Gene: 74440
• Alliance
  gene page
• Transcription Start Sites
  35 TSS

Location &
Maps

• Sequence Map
  Chr8:117983803-118186169 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 63.87 cM, cytoband E1
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  5753 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921690	protein coding gene	Chr8:117983758-118188245 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034173	protein coding gene	Chr8:120409854-120635778 (+)
A/J	MGP_AJ_G0034153	protein coding gene	Chr8:115498726-115709120 (+)
AKR/J	MGP_AKRJ_G0034080	protein coding gene	Chr8:118861152-119066464 (+)
BALB/cJ	MGP_BALBcJ_G0034147	protein coding gene	Chr8:115697003-115904451 (+)
C3H/HeJ	MGP_C3HHeJ_G0033858	protein coding gene	Chr8:119589119-119803124 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034667	protein coding gene	Chr8:124490019-124709445 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031609	protein coding gene	Chr8:108425319-108633280 (+)
CAST/EiJ	MGP_CASTEiJ_G0033185	protein coding gene	Chr8:119424054-119670650 (+)
CBA/J	MGP_CBAJ_G0033831	protein coding gene	Chr8:128986999-129221104 (+)
DBA/2J	MGP_DBA2J_G0033987	protein coding gene	Chr8:114723034-114934593 (+)
FVB/NJ	MGP_FVBNJ_G0033930	protein coding gene	Chr8:113721606-113937526 (+)
LP/J	MGP_LPJ_G0034076	protein coding gene	Chr8:120534645-120774965 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033977	protein coding gene	Chr8:131577312-131808770 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034685	protein coding gene	Chr8:118951480-119167437 (+)
PWK/PhJ	MGP_PWKPhJ_G0032887	protein coding gene	Chr8:114434051-114650678 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032727	protein coding gene	Chr8:117652097-117881307 (+)
WSB/EiJ	MGP_WSBEiJ_G0033301	protein coding gene	Chr8:119672781-119888757 (+)

Homology

• Human Ortholog
  CMIP, c-Maf inducing protein

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CMIP, c-Maf inducing protein
  
• Synonyms
  TCMIP
• Links
  HGNC:24319

  NCBI Gene ID: 80790

  neXtProt AC: NX_Q8IY22

  UniProt: Q8IY22

  
  
• Chr Location
  16q23.2-q23.3; chr16:81444808-81711762 (+)  GRCh38

---

• MGI Vertebrate Homology
  Cmip stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: CMIP
• Gene Tree
  Cmip
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotypes from 2 alleles in 2 genetic backgrounds
  18 phenotype references
  

• All Mutations and Alleles
  27
• Endonuclease-mediated
  2
• Gene trapped
  23
• Targeted
  2
• Incidental Mutations
  APF
• Find Mice (IMSR)
  49 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Gene Ontology
(GO)
Classifications

• All GO Annotations
  7
• GO References
  4

Expression

• Assay Results
  713
• Tissues
  2
• cDNA Data
  119
• Literature Summary
  1

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase cmip

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  12
• UniProt
  2
• CCDS
  CCDS52680.1, CCDS52681.1

• Ensembl
  ENSMUSG00000034390 (Evidence)
• NCBI Gene
  74440

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034390	Ensembl Gene Model | MGI Sequence Detail	202367	C57BL/6J
transcript	ENSMUST00000166750	Ensembl | MGI Sequence Detail	2408	Not Applicable
polypeptide	ENSMUSP00000130264	Ensembl | MGI Sequence Detail	773	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000005623 C-Maf-inducing protein
  (term hierarchy)
• InterPro Domains
  IPR052813 C-Maf-inducing protein
  IPR032675 Leucine-rich repeat domain superfamily
• GlyGen
  Q9D486 1 site, 1 O-linked glycan (1 site)

Molecular
Reagents

• All nucleic 122

  cDNA 122

  
  

  Microarray probesets 7

Other
Accession IDs

MGI:1924458, MGI:2142494, MGI:2142564

References

• Summaries
  All 45

  Developmental Gene Expression 1

  Gene Ontology 4

  Phenotypes 18
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Cmip:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79582	Chr8:117983398-117983463 (+)	-372 bp
Tssr79583	Chr8:117983472-117983494 (+)	-320 bp
Tssr79584	Chr8:117983537-117983542 (+)	-263 bp
Tssr79585	Chr8:117983549-117983568 (+)	-244 bp
Tssr79586	Chr8:117983587-117983616 (+)	-201 bp
Tssr79587	Chr8:117983821-117983846 (+)	31 bp
Tssr79588	Chr8:117983875-117983886 (+)	78 bp
Tssr79590	Chr8:117992643-117992648 (+)	8,843 bp
Tssr79591	Chr8:117992812-117992830 (+)	9,018 bp
Tssr79592	Chr8:118001414-118001448 (+)	17,628 bp
Tssr79593	Chr8:118001822-118001836 (+)	18,026 bp
Tssr79594	Chr8:118001856-118001871 (+)	18,061 bp
Tssr79595	Chr8:118001876-118001913 (+)	18,092 bp
Tssr79596	Chr8:118001936-118001954 (+)	18,142 bp
Tssr79597	Chr8:118029205-118029220 (+)	45,410 bp
Tssr79598	Chr8:118034471-118034475 (+)	50,670 bp
Tssr79599	Chr8:118055613-118055617 (+)	71,812 bp
Tssr79600	Chr8:118057135-118057220 (+)	73,375 bp
Tssr79601	Chr8:118066935-118066938 (+)	83,134 bp
Tssr79602	Chr8:118067211-118067233 (+)	83,419 bp
Tssr79603	Chr8:118067274-118067289 (+)	83,479 bp
Tssr79604	Chr8:118069409-118069412 (+)	85,608 bp
Tssr2697	Chr8:118069997-118070046 (+)	86,219 bp
Tssr79605	Chr8:118091779-118091793 (+)	107,983 bp
Tssr79606	Chr8:118106087-118106124 (+)	122,303 bp
Tssr79607	Chr8:118106128-118106143 (+)	122,333 bp
Tssr79608	Chr8:118127904-118127922 (+)	144,110 bp
Tssr79609	Chr8:118128109-118128123 (+)	144,313 bp
Tssr79610	Chr8:118128165-118128221 (+)	144,390 bp
Tssr79611	Chr8:118128290-118128324 (+)	144,504 bp
Tssr79612	Chr8:118130561-118130597 (+)	146,776 bp
Tssr79613	Chr8:118137391-118137393 (+)	153,589 bp
Tssr79614	Chr8:118137795-118137798 (+)	153,994 bp
Tssr79615	Chr8:118138044-118138061 (+)	154,250 bp
Tssr79616	Chr8:118183615-118183677 (+)	199,843 bp