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Slco6c1 Gene Detail
Summary
  • Symbol
    Slco6c1
  • Name
    solute carrier organic anion transporter family, member 6c1
  • Synonyms
    4933404A18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921691
    NCBI Gene: 74441
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:96986763-97056026 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 47.76 cM, cytoband D
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1947 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921691
 protein coding gene Chr1:96986763-97056066 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016357
 protein coding gene Chr1:98809243-98884667 (-)
A/J MGP_AJ_G0016341
 protein coding gene Chr1:95340954-95412357 (-)
AKR/J MGP_AKRJ_G0016302
 protein coding gene Chr1:98111726-98201803 (-)
BALB/cJ MGP_BALBcJ_G0016297
 protein coding gene Chr1:95499025-95571266 (-)
C3H/HeJ MGP_C3HHeJ_G0016124
 protein coding gene Chr1:98424508-98501363 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016756
 protein coding gene Chr1:102725745-102804811 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014474
 protein coding gene Chr1:89674424-89756203 (-)
CAST/EiJ MGP_CASTEiJ_G0015706
 protein coding gene Chr1:97670034-97742541 (-)
CBA/J MGP_CBAJ_G0016097
 protein coding gene Chr1:106100659-106197969 (-)
DBA/2J MGP_DBA2J_G0016202
 protein coding gene Chr1:94549679-94630548 (-)
FVB/NJ MGP_FVBNJ_G0016203
 protein coding gene Chr1:93553468-93625355 (-)
LP/J MGP_LPJ_G0016276
 protein coding gene Chr1:100075934-100146772 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016229
 protein coding gene Chr1:109688691-109799344 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016795
 protein coding gene Chr1:98119398-98198709 (-)
PWK/PhJ MGP_PWKPhJ_G0015494
 protein coding gene Chr1:93802109-93876612 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015278
 protein coding gene Chr1:96986495-97059807 (-)
WSB/EiJ MGP_WSBEiJ_G0015769
 protein coding gene Chr1:97938940-98014155 (-)



Homology
more
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Synonyms
    CT48, GST, OATP6A1, OATP-I, OATPY
  • Links
    NCBI Gene ID: 133482
    neXtProt AC: NX_Q86UG4
    UniProt: Q86UG4

  • Chr Location
    5q21.1; chr5:102371774-102499016 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    729
  • Tissues
    23
  • cDNA Data
    12
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026331 Ensembl Gene Model | MGI Sequence Detail 69264 C57BL/6J ±  kb
transcript ENSMUST00000027569 Ensembl | MGI Sequence Detail 2747 Not Applicable  
polypeptide ENSMUSP00000027569 Ensembl | MGI Sequence Detail 706 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138679
References
more
  • Summaries
    All 37
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:314092 Lin S, et al., Structure of a mammalian sperm cation channel complex. Nature. 2021 Jul;595(7869):746-750
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory