5430405H02Rik Gene Detail

Summary

• Symbol
  5430405H02Rik
• Name
  RIKEN cDNA 5430405H02 gene
• Synonyms
  2610307N17Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921737
  NCBI Gene: 74487
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:156694323-156704865 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 77.88 cM, cytoband H2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  344 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921737	lncRNA gene	Chr2:156685045-156704926 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015482	unclassified non-coding RNA gene	Chr2:161782196-161808603 (-)
A/J	MGP_AJ_G0015459	unclassified non-coding RNA gene	Chr2:155331200-155355169 (-)
AKR/J	MGP_AKRJ_G0015423	unclassified non-coding RNA gene	Chr2:159848962-159874646 (-)
BALB/cJ	MGP_BALBcJ_G0015422	unclassified non-coding RNA gene	Chr2:155620370-155639159 (-)
C3H/HeJ	MGP_C3HHeJ_G0015245	unclassified non-coding RNA gene	Chr2:160193381-160212094 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015876	unclassified non-coding RNA gene	Chr2:166491203-166517655 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013614	unclassified non-coding RNA gene	Chr2:148790919-148809571 (-)
CAST/EiJ	MGP_CASTEiJ_G0014797	unclassified non-coding RNA gene	Chr2:160530206-160552419 (-)
CBA/J	MGP_CBAJ_G0015226	unclassified non-coding RNA gene	Chr2:172572085-172591249 (-)
DBA/2J	MGP_DBA2J_G0015320	unclassified non-coding RNA gene	Chr2:154501657-154522085 (-)
FVB/NJ	MGP_FVBNJ_G0015327	unclassified non-coding RNA gene	Chr2:152871212-152894189 (-)
LP/J	MGP_LPJ_G0015398	unclassified non-coding RNA gene	Chr2:161892513-161910666 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015351	unclassified non-coding RNA gene	Chr2:176450052-176472679 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015916	unclassified non-coding RNA gene	Chr2:159706653-159728162 (-)
PWK/PhJ	MGP_PWKPhJ_G0014585	unclassified non-coding RNA gene	Chr2:154009726-154028956 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014373	unclassified non-coding RNA gene	Chr2:158649932-158667684 (-)
WSB/EiJ	MGP_WSBEiJ_G0014904	unclassified non-coding RNA gene	Chr2:160598560-160618700 (-)

Homology

• Gene Tree
  5430405H02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000085741 (Evidence)
• NCBI Gene
  74487

Representative Sequences			Length	Strain/Species
genomic	74487	NCBI Gene Model | MGI Sequence Detail	10543	C57BL/6J
transcript	NR_015591	RefSeq | MGI Sequence Detail	1509	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1924041

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5430405H02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27066	Chr2:156704885-156704926 (-)	-41 bp
Tssr27065	Chr2:156704837-156704884 (-)	4 bp
Tssr27064	Chr2:156704750-156704775 (-)	102 bp
Tssr27063	Chr2:156704677-156704715 (-)	169 bp