4930413E15Rik Gene Detail

Summary

• Symbol
  4930413E15Rik
• Name
  RIKEN cDNA 4930413E15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921877
  NCBI Gene: 74627
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:119090404-119099326 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  341 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921877	lncRNA gene	Chr5:119090404-119099326 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006785	lincRNA gene	Chr5:122178406-122189053 (+)
A/J	MGP_AJ_G0006779	lincRNA gene	Chr5:117161568-117170581 (+)
AKR/J	MGP_AKRJ_G0006749	lincRNA gene	Chr5:120941575-120951948 (+)
BALB/cJ	MGP_BALBcJ_G0006755	lincRNA gene	Chr5:118581028-118590185 (+)
C3H/HeJ	MGP_C3HHeJ_G0006700	lincRNA gene	Chr5:121478503-121487340 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006920	lincRNA gene	Chr5:126784128-126792907 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006175	lincRNA gene	Chr5:111911812-111920348 (+)
CAST/EiJ	MGP_CASTEiJ_G0006623	lincRNA gene	Chr5:120533676-120542700 (+)
CBA/J	MGP_CBAJ_G0006682	lincRNA gene	Chr5:131718753-131727609 (+)
DBA/2J	MGP_DBA2J_G0006702	lincRNA gene	Chr5:117263933-117273104 (+)
FVB/NJ	MGP_FVBNJ_G0006726	lincRNA gene	Chr5:116154397-116163254 (+)
LP/J	MGP_LPJ_G0006786	lincRNA gene	Chr5:122668582-122677503 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006709	lincRNA gene	Chr5:135822779-135831620 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006922	lincRNA gene	Chr5:120507468-120519105 (+)
PWK/PhJ	MGP_PWKPhJ_G0006562	lincRNA gene	Chr5:115996443-116005340 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006468	lincRNA gene	Chr5:118129045-118137791 (+)
WSB/EiJ	MGP_WSBEiJ_G0006674	lincRNA gene	Chr5:121087043-121095856 (+)

Homology

• Gene Tree
  4930413E15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930413E15Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107144 (Evidence)
• NCBI Gene
  74627

Representative Sequences			Length	Strain/Species
genomic	74627	NCBI Gene Model | MGI Sequence Detail	8923	C57BL/6J
transcript	NR_040694	RefSeq | MGI Sequence Detail	1290	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930413E15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1614	Chr5:119090387-119090400 (+)	-10 bp