S100pbp MGI Mouse Gene Detail - MGI:1921898

Symbol

S100pbp
Name

S100P binding protein
Synonyms

4930429A08Rik

Feature Type

protein coding gene
IDs

MGI:1921898
NCBI Gene: 74648
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr4:129041795-129083485 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 62.96 cM, cytoband D2.3
Mapping Data

3 experiments

SNPs within 2kb

389 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921898	protein coding gene	Chr4:129041795-129083520 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0028815	protein coding gene	Chr4:131008304-131056867 (-)
A/J	MGP_AJ_G0028774	protein coding gene	Chr4:125821648-125863378 (-)
AKR/J	MGP_AKRJ_G0028727	protein coding gene	Chr4:129309979-129351575 (-)
BALB/cJ	MGP_BALBcJ_G0028797	protein coding gene	Chr4:126399985-126441430 (-)
C3H/HeJ	MGP_C3HHeJ_G0028511	protein coding gene	Chr4:129358584-129399900 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0029239	protein coding gene	Chr4:135971403-136014505 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026512	protein coding gene	Chr4:118948375-118990650 (-)
CAST/EiJ	MGP_CASTEiJ_G0027944	protein coding gene	Chr4:127536300-127583656 (-)
CBA/J	MGP_CBAJ_G0028477	protein coding gene	Chr4:139290555-139336381 (-)
DBA/2J	MGP_DBA2J_G0028626	protein coding gene	Chr4:126247677-126289668 (-)
FVB/NJ	MGP_FVBNJ_G0028593	protein coding gene	Chr4:125005252-125046756 (-)
LP/J	MGP_LPJ_G0028727	protein coding gene	Chr4:131319180-131364717 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028619	protein coding gene	Chr4:144193082-144235278 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029277	protein coding gene	Chr4:129680354-129724841 (-)
PWK/PhJ	MGP_PWKPhJ_G0027665	protein coding gene	Chr4:122822726-122865406 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0027492	protein coding gene	Chr4:125534512-125579684 (-)
WSB/EiJ	MGP_WSBEiJ_G0028024	protein coding gene	Chr4:129788844-129832261 (-)

Human Ortholog

S100PBP, S100P binding protein

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

S100PBP, S100P binding protein
Synonyms

S100PBPR
Links

HGNC:25768

NCBI Gene ID: 64766

neXtProt AC: NX_Q96BU1

UniProt: Q96BU1
Chr Location

1p35.1; chr1:32816562-32858879 (+) GRCh38

MGI Vertebrate Homology

S100pbp stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: S100PBP
Gene Tree

S100pbp

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Phenotype Summary

11 phenotype references

All Mutations and Alleles

26
Chemically induced (other)

2
Endonuclease-mediated

1
Gene trapped

21
Radiation induced

1
Targeted

1
Genomic Mutations

4 involving S100pbp
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

21 strains or lines available

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All GO Annotations

12
GO References

3

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

83

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase s100pbp

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All Sequences

100
RefSeq

42
UniProt

2
CCDS

CCDS18684.1, CCDS84797.1, CCDS89830.1

Ensembl

ENSMUSG00000040928 (Evidence)
NCBI Gene

74648

			Length	Strain/Species	Flank
genomic	74648	NCBI Gene Model \| MGI Sequence Detail	41691	C57BL/6J	± kb
transcript	NM_001379588	RefSeq \| MGI Sequence Detail	4662	C57BL/6
polypeptide	Q9D5K4	UniProt \| EBI \| MGI Sequence Detail	396	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000014422 S100P-binding protein

(term hierarchy)
InterPro Domains

IPR026097 S100P-binding protein

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All nucleic 83

cDNA 83

Microarray probesets 4

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MGI:2140389

Summaries

All 37

Gene Ontology 3

Phenotypes 11
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for S100pbp:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43474	Chr4:129083439-129083490 (-)	20 bp
Tssr43473	Chr4:129083393-129083424 (-)	76 bp
Tssr43472	Chr4:129083362-129083387 (-)	110 bp
Tssr1305	Chr4:129083251-129083276 (-)	221 bp
Tssr43471	Chr4:129083224-129083241 (-)	252 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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