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Slc25a54 Gene Detail
Summary
  • Symbol
    Slc25a54
  • Name
    solute carrier family 25, member 54
  • Synonyms
    4930443G12Rik, SCaMC-1like
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921936
    NCBI Gene: 74686
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:108987815-109023898 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 48.13 cM, cytoband G1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1123 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921936
 protein coding gene Chr3:108987785-109024003 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027792
 protein coding gene Chr3:110672041-110717637 (+)
A/J MGP_AJ_G0027752
 protein coding gene Chr3:107156786-107193006 (+)
AKR/J MGP_AKRJ_G0027717
 protein coding gene Chr3:109771838-109814782 (+)
BALB/cJ MGP_BALBcJ_G0027764
 protein coding gene Chr3:106850823-106891517 (+)
C3H/HeJ MGP_C3HHeJ_G0027494
 protein coding gene Chr3:110121004-110162637 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028208
 protein coding gene Chr3:114776178-114818378 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025546
 protein coding gene Chr3:103270067-103303739 (+)
CAST/EiJ MGP_CASTEiJ_G0026950
 protein coding gene Chr3:109519085-109568006 (+)
CBA/J MGP_CBAJ_G0027469
 protein coding gene Chr3:118727361-118771967 (+)
DBA/2J MGP_DBA2J_G0027611
 protein coding gene Chr3:106333815-106371125 (+)
FVB/NJ MGP_FVBNJ_G0027579
 protein coding gene Chr3:104210035-104250510 (+)
LP/J MGP_LPJ_G0027718
 protein coding gene Chr3:112101519-112134447 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027609
 protein coding gene Chr3:124746796-124792957 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028263
 protein coding gene Chr3:109378094-109417531 (+)
PWK/PhJ MGP_PWKPhJ_G0026676
 protein coding gene Chr3:106080177-106122622 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026496
 protein coding gene Chr3:107531357-107568719 (+)
WSB/EiJ MGP_WSBEiJ_G0027030
 protein coding gene Chr3:109904267-109947598 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Slc25a54
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    34 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74686 NCBI Gene Model | MGI Sequence Detail 36084 C57BL/6J ±  kb
transcript NM_029054 RefSeq | MGI Sequence Detail 1538 Not Specified  
polypeptide NP_083330 RefSeq | MGI Sequence Detail 473 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR018247 EF-Hand 1, calcium-binding site
    IPR002048 EF-hand domain
    IPR011992 EF-hand domain pair
    IPR023395 Mitochondrial carrier domain superfamily
    IPR002067 Mitochondrial carrier protein
    IPR018108 Mitochondrial substrate/solute carrier
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Diseases 1
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory