4930443O20Rik Gene Detail

Summary

• Symbol
  4930443O20Rik
• Name
  RIKEN cDNA 4930443O20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921937
  NCBI Gene: 74687
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:84903958-84916805 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921937	lncRNA gene	Chr2:84903958-84916805 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015434	unclassified non-coding RNA gene	Chr2:85784127-85791418 (-)
A/J	MGP_AJ_G0015409	unclassified non-coding RNA gene	Chr2:82459046-82466332 (-)
AKR/J	MGP_AKRJ_G0015373	unclassified non-coding RNA gene	Chr2:84592162-84598320 (-)
BALB/cJ	MGP_BALBcJ_G0015373	unclassified non-coding RNA gene	Chr2:82589670-82595827 (-)
C3H/HeJ	MGP_C3HHeJ_G0015197	unclassified non-coding RNA gene	Chr2:84822045-84829894 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015827	unclassified non-coding RNA gene	Chr2:88436658-88443979 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013567	unclassified non-coding RNA gene	Chr2:79287748-79293705 (-)
CAST/EiJ	MGP_CASTEiJ_G0014748	unclassified non-coding RNA gene	Chr2:85374390-85380507 (-)
CBA/J	MGP_CBAJ_G0015176	unclassified non-coding RNA gene	Chr2:91591907-91598017 (-)
DBA/2J	MGP_DBA2J_G0015271	unclassified non-coding RNA gene	Chr2:81995706-82001835 (-)
FVB/NJ	MGP_FVBNJ_G0015278	unclassified non-coding RNA gene	Chr2:81252808-81258934 (-)
LP/J	MGP_LPJ_G0015351	unclassified non-coding RNA gene	Chr2:85577128-85584789 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015304	unclassified non-coding RNA gene	Chr2:93908148-93914261 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015866	unclassified non-coding RNA gene	Chr2:84838077-84844193 (-)
PWK/PhJ	MGP_PWKPhJ_G0014536	unclassified non-coding RNA gene	Chr2:81842382-81849883 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014324	unclassified non-coding RNA gene	Chr2:84963809-84969843 (-)
WSB/EiJ	MGP_WSBEiJ_G0014855	unclassified non-coding RNA gene	Chr2:85499735-85505846 (-)

Homology

• Gene Tree
  4930443O20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving 4930443O20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086969 (Evidence)
• NCBI Gene
  74687

Representative Sequences			Length	Strain/Species
genomic	74687	NCBI Gene Model | MGI Sequence Detail	12848	C57BL/6J
transcript	NR_040504	RefSeq | MGI Sequence Detail	1443	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for 4930443O20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25066	Chr2:84916855-84916860 (-)	-53 bp
Tssr25065	Chr2:84916813-84916842 (-)	-23 bp
Tssr25064	Chr2:84916800-84916808 (-)	1 bp