4930440C22Rik Gene Detail

Summary

• Symbol
  4930440C22Rik
• Name
  RIKEN cDNA 4930440C22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921939
  NCBI Gene: 74689
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:94725167-94730197 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921939	lncRNA gene	Chr1:94724808-94730197 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004922	lincRNA gene	Chr1:96468842-96474231 (+)
A/J	MGP_AJ_G0004904	lincRNA gene	Chr1:93031139-93036528 (+)
AKR/J	MGP_AKRJ_G0004882	lincRNA gene	Chr1:95772841-95778230 (+)
BALB/cJ	MGP_BALBcJ_G0004885	lincRNA gene	Chr1:93217784-93223646 (+)
C3H/HeJ	MGP_C3HHeJ_G0004834	lincRNA gene	Chr1:96021830-96027219 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005035	lincRNA gene	Chr1:100262433-100267840 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004459	lincRNA gene	Chr1:87595726-87603050 (+)
CAST/EiJ	MGP_CASTEiJ_G0004784	lincRNA gene	Chr1:95329874-95337083 (+)
CBA/J	MGP_CBAJ_G0004826	lincRNA gene	Chr1:103464306-103472125 (+)
DBA/2J	MGP_DBA2J_G0004845	lincRNA gene	Chr1:92263729-92269085 (+)
FVB/NJ	MGP_FVBNJ_G0004864	lincRNA gene	Chr1:91308450-91313839 (+)
LP/J	MGP_LPJ_G0004923	lincRNA gene	Chr1:97737490-97743618 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0005040	lincRNA gene	Chr1:95793594-95798984 (+)
PWK/PhJ	MGP_PWKPhJ_G0004737	lincRNA gene	Chr1:91558401-91564077 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004663	lincRNA gene	Chr1:94680375-94685564 (+)
WSB/EiJ	MGP_WSBEiJ_G0004830	lincRNA gene	Chr1:95605279-95611253 (+)

Homology

• Gene Tree
  4930440C22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930440C22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100518 (Evidence)
• NCBI Gene
  74689

Representative Sequences			Length	Strain/Species
genomic	74689	NCBI Gene Model | MGI Sequence Detail	5031	C57BL/6J
transcript	NR_040473	RefSeq | MGI Sequence Detail	1565	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573