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Ccdc7a Gene Detail
Summary
  • Symbol
    Ccdc7a
  • Name
    coiled-coil domain containing 7A
  • Synonyms
    4930517G15Rik, 4930540C21Rik, Ccdc7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921953
    NCBI Gene: 74703
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:129460715-129791973 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 76.12 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5955 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921953
 protein coding gene Chr8:129460715-129791998 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034304
 protein coding gene Chr8:132949475-133041026 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0034209
 protein coding gene Chr8:131128135-131217935 (-)
BALB/cJ MGP_BALBcJ_G0034275
 protein coding gene Chr8:127604687-127681075 (-)
C3H/HeJ MGP_C3HHeJ_G0033987
 protein coding gene Chr8:131742808-131842636 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034795
 protein coding gene Chr8:137239631-137332329 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0033313
 protein coding gene Chr8:132058759-132076008 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0034816
 protein coding gene Chr8:131439175-131486870 (+)
PWK/PhJ MGP_PWKPhJ_G0033016
 protein coding gene Chr8:126483960-126503024 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032854
 protein coding gene Chr8:130108539-130135162 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CCDC7, coiled-coil domain containing 7
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC7, coiled-coil domain containing 7
  • Synonyms
    BIOT2, BioT2-A, BioT2-B, BioT2-C, C10orf68
  • Links
    NCBI Gene ID: 79741
    neXtProt AC: NX_Q96M83
    UniProt: Q96M83

  • Chr Location
    10p11.22; chr10:32443324-32882874 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from multigenic genotypes
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74703 NCBI Gene Model | MGI Sequence Detail 331259 C57BL/6J ±  kb
transcript NM_001395237 RefSeq | MGI Sequence Detail 5786 C57BL/6  
polypeptide Q9D541 UniProt | EBI | MGI Sequence Detail 371 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000032530 coiled-coil domain-containing protein 7
    (term hierarchy)
  • InterPro Domains
    IPR029272 Coiled-coil domain-containing protein 7
  • GlyGen
    Q9D541 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 4
Other
Accession IDs
less
MGI:1922490
References
more
  • Summaries
    All 22
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:221927 Satoh A, et al., Deficiency of Prdm13, a dorsomedial hypothalamus-enriched gene, mimics age-associated changes in sleep quality and adiposity. Aging Cell. 2015 Apr;14(2):209-18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory