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Mirt1 Gene Detail
Summary
  • Symbol
    Mirt1
  • Name
    myocardial infarction associated transcript 1
  • Synonyms
    5430437C04Rik, 5830416P10Rik, Gm10758
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1922001
    NCBI Gene: 381232
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:53431661-53453227 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 47.80 cM, cytoband D2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    808 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922001
 lncRNA gene Chr19:53429643-53453227 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005843
 lincRNA gene Chr19:53592083-53615623 (-)
A/J MGP_AJ_G0005835
 lincRNA gene Chr19:50941837-50965964 (-)
AKR/J MGP_AKRJ_G0005810
 lincRNA gene Chr19:52543512-52567037 (-)
BALB/cJ MGP_BALBcJ_G0005814
 lincRNA gene Chr19:51030925-51054478 (-)
C3H/HeJ MGP_C3HHeJ_G0005761
 lincRNA gene Chr19:52765022-52789930 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005974
 lincRNA gene Chr19:54881718-54908059 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005313
 lincRNA gene Chr19:49939548-49964193 (-)
CAST/EiJ MGP_CASTEiJ_G0005698
 lincRNA gene Chr19:52717810-52745908 (-)
CBA/J MGP_CBAJ_G0005746
 lincRNA gene Chr19:57601159-57624755 (-)
DBA/2J MGP_DBA2J_G0005767
 lincRNA gene Chr19:50753709-50777238 (-)
FVB/NJ MGP_FVBNJ_G0005793
 lincRNA gene Chr19:50455078-50480255 (-)
LP/J MGP_LPJ_G0005847
 lincRNA gene Chr19:53450565-53475809 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005780
 lincRNA gene Chr19:57062660-57087264 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005971
 lincRNA gene Chr19:52735978-52763851 (-)
PWK/PhJ MGP_PWKPhJ_G0005647
 lincRNA gene Chr19:50662955-50687245 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005560
 lincRNA gene Chr19:51419901-51444571 (-)
WSB/EiJ MGP_WSBEiJ_G0005751
 lincRNA gene Chr19:52874853-52900616 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
  • All Sequences
    38
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097636 Ensembl Gene Model | MGI Sequence Detail 21567 C57BL/6J ±  kb
transcript ENSMUST00000180489 Ensembl | MGI Sequence Detail 3261 Not Applicable  
polypeptide Q3UKC4 UniProt | EBI | MGI Sequence Detail 155 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
Other
Accession IDs
less
MGI:1925346, MGI:3642467
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory