4930481A15Rik Gene Detail

Summary

• Symbol
  4930481A15Rik
• Name
  RIKEN cDNA 4930481A15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922181
  NCBI Gene: 74931
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr19:5456843-5472875 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  444 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922181	lncRNA gene	Chr19:5456768-5472875 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003465	antisense lncRNA gene	Chr19:2373326-2389767 (+)
A/J	MGP_AJ_G0003444	antisense lncRNA gene	Chr19:2241689-2258700 (+)
AKR/J	MGP_AKRJ_G0003424	antisense lncRNA gene	Chr19:2300959-2316549 (+)
BALB/cJ	MGP_BALBcJ_G0003433	antisense lncRNA gene	Chr19:2235367-2251339 (+)
C3H/HeJ	MGP_C3HHeJ_G0003382	antisense lncRNA gene	Chr19:2307345-2325233 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003571	antisense lncRNA gene	Chr19:2427042-2443172 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003345	antisense lncRNA gene	Chr19:2337207-2348096 (+)
CBA/J	MGP_CBAJ_G0003379	antisense lncRNA gene	Chr19:2533481-2549405 (+)
DBA/2J	MGP_DBA2J_G0003387	antisense lncRNA gene	Chr19:2220759-2236297 (+)
FVB/NJ	MGP_FVBNJ_G0003405	antisense lncRNA gene	Chr19:2228145-2243974 (+)
LP/J	MGP_LPJ_G0003459	antisense lncRNA gene	Chr19:2351289-2368617 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003393	antisense lncRNA gene	Chr19:2394373-2410401 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003574	antisense lncRNA gene	Chr19:2311390-2329137 (+)
PWK/PhJ	MGP_PWKPhJ_G0003301	antisense lncRNA gene	Chr19:2258074-2269315 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003246	antisense lncRNA gene	Chr19:2296046-2306525 (+)
WSB/EiJ	MGP_WSBEiJ_G0003379	antisense lncRNA gene	Chr19:2323542-2344233 (+)

Homology

• Gene Tree
  4930481A15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000086938 (Evidence)
• NCBI Gene
  74931

Representative Sequences			Length	Strain/Species
genomic	74931	NCBI Gene Model | MGI Sequence Detail	16033	C57BL/6J
transcript	NR_015545	RefSeq | MGI Sequence Detail	2184	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for 4930481A15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154412	Chr19:5456117-5456121 (+)	-724 bp
Tssr5410	Chr19:5456824-5456864 (+)	1 bp
Tssr154413	Chr19:5456892-5456908 (+)	57 bp
Tssr154414	Chr19:5464916-5464940 (+)	8,085 bp
Tssr154415	Chr19:5465002-5465006 (+)	8,161 bp